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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55306.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  168/915 : Eukaryota  32/199 : Viruses  0/175   --->[See Alignment]
c.3.1d.168.1
:544 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->533 1d4cC PDBj 1e-22 28.6 %
:RPS:PDB   41->533 1d4cB PDBj 2e-33 25.9 %
:RPS:SCOP  47->212,458->533 1e7pA2  c.3.1.4 * 6e-10 19.4 %
:RPS:SCOP  332->454 1d4cA3  d.168.1.1 * 4e-15 20.7 %
:HMM:SCOP  1->538 1jnrA2 c.3.1.4 * 1.8e-42 31.6 %
:RPS:PFM   47->518 PF00890 * FAD_binding_2 4e-10 37.3 %
:HMM:PFM   16->507 PF00890 * FAD_binding_2 3.9e-52 33.3 372/421  
:BLT:SWISS 44->533 FRDA_SHEON 4e-22 28.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55306.1 GT:GENE BAD55306.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 480220..481854 GB:FROM 480220 GB:TO 481854 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55306.1 LENGTH 544 SQ:AASEQ MASRVQASADADLAADVVVIGFGAAGACAALEATAAGAQVLVLERFTGGGTSALSGGIIYAGGGTSVQRAAGVSDTPEQMLAYLTREVGDAVAPETLRRFVEESPAMIDWLQGHGVPFEPSLCPYKTSYPNDKYYLYYSGSEVSGYGREVAEPAQRGHRVKGRGTSGKKLTGPLAASAARHGVRVETLTTATRLITDADGAVVGVECRTLRDAPAAVRDRYVRMAKVAAKPGIYYPPLRKNLERRLEALDRRYGTTIRVHARRGVIVSAGGFIANRELVHRYGPQYRHGLELGSTGDDGSGILMAQEVGAATDRMGNISAWRFILPPSAFTGALLVDAEGRRVIDETRYGAAVGHKLVNEHDGLGWVLADDERMRLGIAQMRTQPAWFQRAQFEVMRRKAIRGATLEDAARKAGIDPAGLRATVEAHNAAIAAGAPDPVGKPAEFCEPVRSGPYWLLDVGIKPSVINPCPMLTLGGVVVDETTGAVRSTAGHDIPGLFAAGRTAVGICSDSYVSGLSLADCVFSGRRAGRSAAGVLEQASAEGN GT:EXON 1|1-544:0| BL:SWS:NREP 1 BL:SWS:REP 44->533|FRDA_SHEON|4e-22|28.6|399/596| SEG 7->40|asadadlaadvvvigfgaagacaaleataagaqv| BL:PDB:NREP 1 BL:PDB:REP 44->533|1d4cC|1e-22|28.6|399/568| RP:PDB:NREP 1 RP:PDB:REP 41->533|1d4cB|2e-33|25.9|405/566| RP:PFM:NREP 1 RP:PFM:REP 47->518|PF00890|4e-10|37.3|332/375|FAD_binding_2| HM:PFM:NREP 1 HM:PFM:REP 16->507|PF00890|3.9e-52|33.3|372/421|FAD_binding_2| GO:PFM:NREP 2 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| RP:SCP:NREP 2 RP:SCP:REP 47->212,458->533|1e7pA2|6e-10|19.4|229/336|c.3.1.4| RP:SCP:REP 332->454|1d4cA3|4e-15|20.7|111/146|d.168.1.1| HM:SCP:REP 1->538|1jnrA2|1.8e-42|31.6|304/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 426 OP:NHOMOORG 201 OP:PATTERN ------------------------------1------------------------------------- --------223---44422-27--4522222485556A96-2-2----1-----1-----425----1-----------3H71----------------------------------------------------------------------------------------------------1-------------------------1-----------1---111111------------------11--12-111213123411-1--1-1-111--------11-------------------------11---1112-76-1------------------24-2------64-----1-------1---------------2-1----------------------1--2--1-1-1------------211-111---1--------------------------------------------------68--2322----21-1-------4------2--2231-----2-----1---------------------------1---1---------21141----21-2------1--------------------------1------2-21221-2321122221332---------------22-11------------------------------1111-------------------------------------------------------------------------------------4-11-1-11--2332-----------------------1----------------------------------------------------------------------------- ------1-----1211----111--11------212------------1---41---1111-------------------------1---21--2--------112---------------------------------------------------------1--------1----------------------111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 504 STR:RPRED 92.6 SQ:SECSTR ########################################EEEccccccTTGGGccccEEccccHHHHHHTTccccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccEEEccTTccccccccEEEcTTTGGccEEccTTcccccEEEccccccHHHHHHHHHHHHHHHTTcEEEccEEEEEEEEcccccEEEEEEEETTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHEETTTEEEEEEccEEEEcccccTTcHHHHHHHcGGGTTcEEcccTTcccHHHHHHHTTTccEEcTTcEEEEEEEcTTTcccTcEEEcccccccccTTccHHHHHHHHHTcTTccEEEEEEHHHHHEEEHHHHHHcTHHHHHHHTTccEEEcEEccHHHHHHHHTccHHHHHHHHHHHHHHHHHTccccccccccccccccccccccccccEEEEEEEEEEEEEccEEEccTTcEEEcTTTccEEEEEEEccTTEEcccTTcccTTHHHHHHHHHHHHHHHHHHHHccccHcccc DISOP:02AL 1-8, 539-544| PSIPRED ccccccccccccEEEEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccHHHcccEEcccccHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHccccEEEEEEHHHccccHHHHHHHHHHHHHHHHHccccccccHHcccEEEEEEEEcccEEEEEEEccEEEEEcccccccHHHHHHHccccccccccccccccHHHHHHHHHHcccEEccccEEEccccccccccccEEEEcccccEEccccccHHHHHHHHHHcccccEEEEEcHHHHHHcccccccccccccHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHcccccEEEccccccEEEEcccEEEcccEEEcccHHHEEccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //