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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55312.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.129.3
:218 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->95 1xn6A PDBj 6e-04 30.8 %
:RPS:PDB   32->157 3cnwA PDBj 7e-12 16.0 %
:RPS:SCOP  35->152 1z94A1  d.129.3.5 * 4e-13 23.9 %
:HMM:SCOP  22->155 1xn6A_ d.129.3.5 * 3.8e-28 33.3 %
:HMM:PFM   40->152 PF08327 * AHSA1 2.2e-19 31.2 109/123  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55312.1 GT:GENE BAD55312.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(486139..486795) GB:FROM 486139 GB:TO 486795 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55312.1 LENGTH 218 SQ:AASEQ MALLTDPVATAGLVTREVRTGSRAGVPTRIAVARRSYPTEQADLWDALTNAERLPRWFLPITGELGVGGRYQLEGNAGGIVEECDEPRQFAVTWEMGPQVSWLRVTLTPGDDGTVLELEHEAPVDPQMWEQFGPGAVGVGWDLALMGLDEHVRTGEPVDTDAALTLHTTPDGITFIRTAAESWADAAIADGDDPTTAHTAAEQTIVFYTTEPEEGAES GT:EXON 1|1-218:0| SEG 179->189|aaeswadaaia| BL:PDB:NREP 1 BL:PDB:REP 44->95|1xn6A|6e-04|30.8|52/143| RP:PDB:NREP 1 RP:PDB:REP 32->157|3cnwA|7e-12|16.0|125/139| HM:PFM:NREP 1 HM:PFM:REP 40->152|PF08327|2.2e-19|31.2|109/123|AHSA1| RP:SCP:NREP 1 RP:SCP:REP 35->152|1z94A1|4e-13|23.9|113/140|d.129.3.5| HM:SCP:REP 22->155|1xn6A_|3.8e-28|33.3|129/0|d.129.3.5|1/1|Bet v1-like| OP:NHOMO 19 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- -------1------1---------------------12-2-----131------------2----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 135 STR:RPRED 61.9 SQ:SECSTR ######################cccTTccEEEEEEEEcccHHHHHHHHccTTcGGGTcTTccEEEEGGGTEEEEEcTTcEEEEETTTTEEEEEEEcccEEEEEEEEEcccTTcEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc############################################################# DISOP:02AL 1-2, 211-218| PSIPRED cccHHHHHHHHHEEEEccccccccccccEEEEEEEEEcccHHHHHHHHccHHHHHHHccccccccccccEEEEcccccEEEEEEEcccEEEEEEEEcccccEEEEEEEEEcccEEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccEEEEEEccccccccc //