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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55316.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  184/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:387 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->384 2rfqA PDBj 0.0 84.7 %
:RPS:PDB   3->361 3d6bA PDBj 1e-29 16.3 %
:RPS:SCOP  1->201 1bucA2  e.6.1.1 * 1e-21 15.9 %
:RPS:SCOP  234->362 2c0uA1  a.29.3.1 * 7e-10 9.8 %
:HMM:SCOP  1->203 2c12A2 e.6.1.1 * 2.5e-39 30.0 %
:HMM:SCOP  217->381 2d29A1 a.29.3.1 * 6.3e-12 20.3 %
:RPS:PFM   239->366 PF08028 * Acyl-CoA_dh_2 4e-13 35.9 %
:HMM:PFM   233->366 PF08028 * Acyl-CoA_dh_2 1.8e-42 44.4 133/134  
:HMM:PFM   10->81 PF02771 * Acyl-CoA_dh_N 3.1e-08 22.2 72/113  
:HMM:PFM   120->146 PF02770 * Acyl-CoA_dh_M 0.00013 25.9 27/52  
:BLT:SWISS 1->366 PIGM_RHOER 9e-75 40.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55316.1 GT:GENE BAD55316.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(489294..490457) GB:FROM 489294 GB:TO 490457 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55316.1 LENGTH 387 SQ:AASEQ MTQEVTERVEALLPTLRERAQEAEDLRRIPDETMKSLQETGFFRLLQPKQWGGYAADPVVFYDTVRRIAAACGSTGWVAGIIGVHNWHLALFDQQAQEDVWGEDTEVRISSSYAPMGAGTAVEDGYRVSGSWAWSSGSDHATWVVVGGPVIKDGKPVDFGSFLIPRSDYRIDDVWNVVGLRGTGSNTVVVEDVFVPRHRFLSFRAMNEMKSPGLERNTDPVYKMPWGTIHPTTISTPIVGMAYGAYAAHVEHQGKRIRAAYAGEKAKDDPFTKVRVAEASSDIDAAWRQLSGNVAEEYALLKEGKEVPFDLRVRARRDQVRATGRAIASIDKLFEASGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTHEFGLPVTDGMV GT:EXON 1|1-387:0| BL:SWS:NREP 1 BL:SWS:REP 1->366|PIGM_RHOER|9e-75|40.7|364/393| BL:PDB:NREP 1 BL:PDB:REP 7->384|2rfqA|0.0|84.7|372/380| RP:PDB:NREP 1 RP:PDB:REP 3->361|3d6bA|1e-29|16.3|331/374| RP:PFM:NREP 1 RP:PFM:REP 239->366|PF08028|4e-13|35.9|128/135|Acyl-CoA_dh_2| HM:PFM:NREP 3 HM:PFM:REP 233->366|PF08028|1.8e-42|44.4|133/134|Acyl-CoA_dh_2| HM:PFM:REP 10->81|PF02771|3.1e-08|22.2|72/113|Acyl-CoA_dh_N| HM:PFM:REP 120->146|PF02770|0.00013|25.9|27/52|Acyl-CoA_dh_M| RP:SCP:NREP 2 RP:SCP:REP 1->201|1bucA2|1e-21|15.9|201/232|e.6.1.1| RP:SCP:REP 234->362|2c0uA1|7e-10|9.8|123/170|a.29.3.1| HM:SCP:REP 1->203|2c12A2|2.5e-39|30.0|203/0|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 217->381|2d29A1|6.3e-12|20.3|153/0|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 332 OP:NHOMOORG 185 OP:PATTERN ---------------1---------------------------------------------------- ----1-----1--144422-24--452222234666559A-131-------1121--1--243-6-12231------------------------------------------------------------------11------11----------------------1-------------1-------11111111-11-111111-1----111---2------------1111111-1111-1-11--------------------------------------------------------------------------------------------------------------------------------------1-51111----2-----------1-11-11--11-1-31161--31211-1-1----2-11---11111111---------------------------------------58--1----2123122111-22211111-14111221---11-------1-2--1-------------------1----------------------------14--------------------------------------1--------1------1-----------------------------------------------------1---------------------------------------------------------------2---------------2222211---21----2-112131---11---------1-------------1------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 387 STR:RPRED 100.0 SQ:SECSTR ccHHHHHHHHHHHHHTHHHHHHHHHHTcccTTHHHHHHTTTcccTTccGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHTTHHHHHHHccHHHHHHHHHHHHHTcccEEEEcccccccEEETTEEEEEEEEEEEETGGGccEEEEEEEEccccEEEHEEEEEEETTTEEccEEccccccTTccEEEEEEEEEEEEGGGccccTTEEccTTcEcTTccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEETTTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccTcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccGGGHHHHHHHHHHHHHHcTccHHHHHHHHHHHHHHHTTcTTTcc DISOP:02AL 386-388| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEccHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccEEEccEEEEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEccccEEcccccccccccccccEEEEccEEEcHHHHcccccccccccccHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccc //