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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55327.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  49/68 : Bacteria  870/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:265 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->260 2uvdA PDBj 4e-29 33.3 %
:RPS:PDB   43->239 3ce6B PDBj 4e-31 9.2 %
:RPS:SCOP  40->260 1pwxA  c.2.1.2 * 3e-35 20.8 %
:HMM:SCOP  18->263 1zemA1 c.2.1.2 * 2.9e-66 43.0 %
:RPS:PFM   41->191 PF00106 * adh_short 1e-17 46.6 %
:HMM:PFM   22->186 PF00106 * adh_short 2.6e-34 32.5 157/167  
:BLT:SWISS 40->264 Y1385_MYCBO 7e-37 40.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55327.1 GT:GENE BAD55327.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 501139..501936 GB:FROM 501139 GB:TO 501936 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55327.1 LENGTH 265 SQ:AASEQ MSGPLSVAPQPIPGHGLLTGRVAVITAAAGTGIGSATARRLLAEGADVVISDWHERRLGETEVELKGEFPERRVAAIACDVQSTTQVDELVRGAAAALGRIDIMVNNAGLGGETPVVDMTDEQWDRVLDITLNGTFRCTRAALNYFRAAGHGGVIVNNASVLGWRAQYGQAHYAAAKAGVMALTRCSAIEAAELGVRINAVAPSIARHAFLDKVSSSELLDRLSEREAFGRAAEPWEVAATIAMLASDYTTYLTGEVVSISSQRA GT:EXON 1|1-265:0| BL:SWS:NREP 1 BL:SWS:REP 40->264|Y1385_MYCBO|7e-37|40.0|220/247| SEG 19->39|tgrvavitaaagtgigsatar| SEG 215->227|ssselldrlsere| BL:PDB:NREP 1 BL:PDB:REP 41->260|2uvdA|4e-29|33.3|216/246| RP:PDB:NREP 1 RP:PDB:REP 43->239|3ce6B|4e-31|9.2|185/485| RP:PFM:NREP 1 RP:PFM:REP 41->191|PF00106|1e-17|46.6|148/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 22->186|PF00106|2.6e-34|32.5|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 40->260|1pwxA|3e-35|20.8|212/252|c.2.1.2| HM:SCP:REP 18->263|1zemA1|2.9e-66|43.0|242/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 13027 OP:NHOMOORG 1110 OP:PATTERN 1111123676867664-6131--1A448446A22---------21144--522-12--1-21643-32 GIS4b3-4449352a*wOO-Ov44g*ONOOOY****l***5kD*MKE72CA2PJJA4A11IJW5IHbbeUB1111--11186V11111454423221--74M4CCqAT6A1111111111111136627C544656HGGKK222FA79CC4356622311523153BB8N5111111211111IC89A551H8JCCDCDFDEEDHDEFFLELLHMDDEAHILJEA666665Gb6444443344444439999C91C15816-1-7B5568745677544434343432222222222222455555555555522222222254357B555444454654662575632118622286123224333335523D29lGGP11211K8*ac659UKSRKGHIGFFIGIIQ-FINFCiEPSrV1tYYMaYgxvrqlTbBGCLJTNDMOHFK33333333QNNB6AC71111111111-1223312212221211116Ft*K7FgXNXyioqrrKQQRNhhutUTTTAS*W*T*na47OOLJAHIITIYGmf7F85746B31111111237KF75N5A311211433324653A43838A97JN331221111111111111111131313668989BCD6K94686586BBA896879766A1-2334711-111AE9B5E69997988899-999A968AAA978999A99JMJC64698667778788767677O8969879317AAAAAA9AAAA11153523287783CFMF111517111111242DEGJF7D577J9QOKMIPSYGKJPLLMJN4121131113334B4344379467FHHFGFE89975651131886555--------1-2----1-----1--------------32321545652A2 11--H8A-522-6BCXdVPVWZQleheFFAEACFGF9KEHEGIDCBPKRYWf*yMTIFDHDG76B2474711A55222123878A8-6-JcFdFUDBA8885BJHD-BJ9*ISFDD744536A5EB1D3ImB-AAF5566D65I628546C3298A8BIcjP9XQFCF7EFAMHG5AB4S2328IELKtOcFCCJ87A8 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 226 STR:RPRED 85.3 SQ:SECSTR #######################################HHHHTTcEEEEEcccHHHHHHHHHTTcEEccHHHHGGGccEEEEcccccccccHHHHHHccTTcEEEEccccGGGccHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEEGEGGccHHHHHcccHHHHHHHHcGGGccccEEEccHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHHHHHHTccTTcccccTTccHHHHHHHHcccEEEcccEEEETcTGG DISOP:02AL 1-15| PSIPRED cccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEccccc //