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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55331.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  95/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:212 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->206 2ibdA PDBj 1e-68 69.8 %
:RPS:PDB   39->212 1bjyB PDBj 7e-18 11.6 %
:RPS:SCOP  39->86 3c07A1  a.4.1.9 * 2e-09 31.2 %
:RPS:SCOP  90->203 1vi0A2  a.121.1.1 * 3e-11 18.6 %
:HMM:SCOP  7->95 1t33A1 a.4.1.9 * 1.5e-18 33.0 %
:HMM:SCOP  90->206 1vi0A2 a.121.1.1 * 1.3e-21 29.3 %
:RPS:PFM   39->69 PF00440 * TetR_N 9e-05 51.6 %
:RPS:PFM   74->189 PF08359 * TetR_C_4 1e-06 27.8 %
:HMM:PFM   24->69 PF00440 * TetR_N 2.4e-20 54.3 46/47  
:HMM:PFM   79->174 PF08359 * TetR_C_4 5.9e-06 22.1 95/133  
:BLT:SWISS 39->203 MTRR_NEIGO 7e-11 27.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55331.1 GT:GENE BAD55331.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 504157..504795 GB:FROM 504157 GB:TO 504795 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55331.1 LENGTH 212 SQ:AASEQ MLGCIMARVTAPDASKSTRRTELLGLAAELFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGRYREIVAAGLSSRDTLEALVLASYESFDRSHAAVAIYQAEAKRLRDAERFAYIDEYNREFRALWHRVLTNGVADGSFRPELDVELAYRFLRDTVWVAVRWYRPGGPITVENLAKQYLTIVLDGLTVPERTDQA GT:EXON 1|1-212:0| BL:SWS:NREP 1 BL:SWS:REP 39->203|MTRR_NEIGO|7e-11|27.2|162/210| SEG 22->38|ellglaaelfaerglra| BL:PDB:NREP 1 BL:PDB:REP 16->206|2ibdA|1e-68|69.8|189/190| RP:PDB:NREP 1 RP:PDB:REP 39->212|1bjyB|7e-18|11.6|172/198| RP:PFM:NREP 2 RP:PFM:REP 39->69|PF00440|9e-05|51.6|31/47|TetR_N| RP:PFM:REP 74->189|PF08359|1e-06|27.8|115/132|TetR_C_4| HM:PFM:NREP 2 HM:PFM:REP 24->69|PF00440|2.4e-20|54.3|46/47|TetR_N| HM:PFM:REP 79->174|PF08359|5.9e-06|22.1|95/133|TetR_C_4| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 39->86|3c07A1|2e-09|31.2|48/75|a.4.1.9| RP:SCP:REP 90->203|1vi0A2|3e-11|18.6|113/117|a.121.1.1| HM:SCP:REP 7->95|1t33A1|1.5e-18|33.0|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 90->206|1vi0A2|1.3e-21|29.3|116/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 128 OP:NHOMOORG 95 OP:PATTERN -------------------------------------------------------------------- ----21--------21111-11--1211111113332644-1------------------112---22-11-----------11----------------------------------------------------------11---------------------------------------11111---11-----------------1-------233-1--------1-----------------------------------------------------------------------------------------------------------------------1-----------------------------------1--------------------------------1-------------11--------------------------1---------------------------------11--12211111111-----11-11111-1112----------------1------------11--------------1---------------------------1-------------------------------1---------------------------------------------------------------------------------------------------------------------------------------21----------------------1------1111---11--------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 92.9 SQ:SECSTR ###############HHHHHHHHHHHHHHHHHHHccTTccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHcccccccTTccHcHHHHHHHHHHHHHHHHHccTHHHHHTTccccGGGHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHTTTTcHHHHHHHHHHHHHHHHHHHHHTTc DISOP:02AL 3-22, 207-212| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc //