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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55340.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  174/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13d.17.4
:293 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->163 1or7A PDBj 4e-04 27.6 %
:RPS:PDB   3->164 3dxjF PDBj 9e-16 10.7 %
:RPS:PDB   178->232 3dm8A PDBj 7e-05 18.2 %
:RPS:SCOP  1->74 1iw7F3  a.177.1.1 * 5e-10 13.5 %
:RPS:SCOP  113->164 1ku3A  a.4.13.2 * 3e-04 21.2 %
:RPS:SCOP  178->285 3dm8A1  d.17.4.20 * 3e-05 18.5 %
:HMM:SCOP  2->71 1h3lA_ a.177.1.1 * 1.6e-15 31.4 %
:HMM:SCOP  102->169 1or7A1 a.4.13.2 * 1.3e-08 35.3 %
:HMM:SCOP  172->286 1qjgA_ d.17.4.3 * 8.1e-11 28.6 %
:RPS:PFM   21->75 PF04542 * Sigma70_r2 6e-06 41.8 %
:HMM:PFM   11->74 PF04542 * Sigma70_r2 2.8e-18 40.6 64/71  
:HMM:PFM   112->162 PF08281 * Sigma70_r4_2 3.9e-12 29.4 51/54  
:HMM:PFM   56->113 PF00842 * Ala_racemase_C 0.001 32.7 55/129  
:BLT:SWISS 14->159 FECI_ECOLI 2e-06 28.8 %
:BLT:SWISS 172->221 MIAA_CAUCR 6e-05 38.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55340.1 GT:GENE BAD55340.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(511298..512179) GB:FROM 511298 GB:TO 512179 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD55340.1 LENGTH 293 SQ:AASEQ MHDEQYLADRFEEHRTHLRAVAYRMLGSLSDADDAVQEAWLRLARTETGDVDNLGGWLTTVVGRVCLDMLRARKTRHEEPLETEHLPDPVILGENTSDPEHEALLADSVGLALLVVLESLSPAERLAFVLHDMFAMPYEQIAPIVDRTPQTAKKLASQARRRVQGLTPAPDPDLPRQRRVVDAFLTAARGGDFDELLQLLDPDVVLRADAGEAMRVIRGAAAVAGQAETFQRMATLCTVHPAVVNGGTGLVNTVEGAPFSVIGFTVANDRITAIDILSDPTRLARLDLTAVLN GT:EXON 1|1-293:0| BL:SWS:NREP 2 BL:SWS:REP 14->159|FECI_ECOLI|2e-06|28.8|139/173| BL:SWS:REP 172->221|MIAA_CAUCR|6e-05|38.0|50/295| SEG 243->256|vvnggtglvntveg| BL:PDB:NREP 1 BL:PDB:REP 31->163|1or7A|4e-04|27.6|123/181| RP:PDB:NREP 2 RP:PDB:REP 3->164|3dxjF|9e-16|10.7|159/349| RP:PDB:REP 178->232|3dm8A|7e-05|18.2|55/135| RP:PFM:NREP 1 RP:PFM:REP 21->75|PF04542|6e-06|41.8|55/70|Sigma70_r2| HM:PFM:NREP 3 HM:PFM:REP 11->74|PF04542|2.8e-18|40.6|64/71|Sigma70_r2| HM:PFM:REP 112->162|PF08281|3.9e-12|29.4|51/54|Sigma70_r4_2| HM:PFM:REP 56->113|PF00842|0.001|32.7|55/129|Ala_racemase_C| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 3 RP:SCP:REP 1->74|1iw7F3|5e-10|13.5|74/184|a.177.1.1| RP:SCP:REP 113->164|1ku3A|3e-04|21.2|52/61|a.4.13.2| RP:SCP:REP 178->285|3dm8A1|3e-05|18.5|108/135|d.17.4.20| HM:SCP:REP 2->71|1h3lA_|1.6e-15|31.4|70/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 102->169|1or7A1|1.3e-08|35.3|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 172->286|1qjgA_|8.1e-11|28.6|112/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 376 OP:NHOMOORG 175 OP:PATTERN -------------------------------------------------------------------- -23-K1111111--67633-35--563333327555826513252B1211--1-------633-1168F6------------1----------1-----------1---1----------------------------------1-1------------------11------------------------1--111111-1-111111-111--111-------------14-------------------------------------------------------------------------------------------11----------------------------------1--1---------2--1111-------1---111--1-----------1-121-12-1-32-1---211111111------11-11-1--------------1-1--------------------------------11--111-122221-11111132111111211-1-1--11----111-2-1---------------------------------------------1-733434--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11----------------------------------------------1----1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 96.2 SQ:SECSTR ##HHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccTHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHH##HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHEEEEEEEEEEccTTcEEEEcHHHHHHHHHHHHHEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEccHHHHHHH####### DISOP:02AL 1-2, 168-175| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEccEEEEEEEEEEEccEEEEEEEEEcHHHHcccccccccc //