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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55346.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  31/68 : Bacteria  773/915 : Eukaryota  178/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->259 1n5dA PDBj 5e-24 37.8 %
:RPS:PDB   12->249 2ae1A PDBj 2e-30 20.0 %
:RPS:SCOP  12->241 1a27A  c.2.1.2 * 4e-25 23.1 %
:HMM:SCOP  9->259 1snyA_ c.2.1.2 * 1.5e-65 38.4 %
:RPS:PFM   12->190 PF00106 * adh_short 5e-19 43.0 %
:HMM:PFM   12->155 PF00106 * adh_short 7e-27 30.9 136/167  
:BLT:SWISS 4->245 MNR1_CAPAN 2e-31 38.1 %
:PROS 160->188|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55346.1 GT:GENE BAD55346.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 517124..517903 GB:FROM 517124 GB:TO 517903 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55346.1 LENGTH 259 SQ:AASEQ MVAMTHNDTATIALITGANKGLGYETARALAARGCTVLVGARDPERGRAAAEKLAADGGDVRFVRLDVTDAATIAETAAYLEAEFGRLDILVNNAAITGGFDTGLLPSTTSIDIMRTVYETNVFGPVAVTNALLPLLRRAEAARIVNVSSEVGSVQLMNDQDGPMWPMVSITYPSSKTALTMITTMYAKELWDTPIKVNAANPGYCATDLNNNSGFRTPEQGAEPIVHLATLPADGPTGQLWGYRWGATDGVEYGPLPW GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 4->245|MNR1_CAPAN|2e-31|38.1|239/314| PROS 160->188|PS00061|ADH_SHORT|PDOC00060| SEG 132->144|allpllrraeaar| BL:PDB:NREP 1 BL:PDB:REP 12->259|1n5dA|5e-24|37.8|241/288| RP:PDB:NREP 1 RP:PDB:REP 12->249|2ae1A|2e-30|20.0|225/252| RP:PFM:NREP 1 RP:PFM:REP 12->190|PF00106|5e-19|43.0|165/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->155|PF00106|7e-27|30.9|136/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 12->241|1a27A|4e-25|23.1|212/285|c.2.1.2| HM:SCP:REP 9->259|1snyA_|1.5e-65|38.4|232/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 5219 OP:NHOMOORG 982 OP:PATTERN ----1131--1--1---1-1----61163435-----------11-32--312-1-----11312-24 695-L1-2--2232EHD77-7F22CU87888AHNONCGPJ3H5F9254-6315534-5--68D1E5CHC931------111381----1162-1-1---34B-46Y3E551111111-1111111111133112315445711192G65954223---211423316CAJ4122211111221565--55-43744344464757666576994B75555769852333424I4443333233444333335331314413---56442212313357621222222--222222222221322333333333222---222112457222222222262331132211--121112-1---2331--11111627D773-111162G88322658852223222322B-573538598FA-N997EDCMMN9B6A6566244446145222222224565-24111111111------11-------------169E5247545IHILJF4444466KF65663APAS8KEB2399A5323462C6A6594134531---1---216931273231111-222-1224161141-331BA11-22-211111-11---1--111--2334363626452212222242332352323-1--13332------87B91A55665556545-6455646475645555554AB9A62336545566666556557933433342-565666666665--14111-1222127687222212211111121223331346352AB6838F8785968C7721111111121226212216533426444442212-1---11552244--------1-2-------------------------3121122242141 1---951-531-3337AF4B8AABD9A2222323421222233-1185DJADKI7C8425242-512--1-1517-----12222132-4I5A2Q5---1324DA6-8F9oGQFIL775556A7EE1C3Fk9-CCD8643B84H82A634A43B779CBKNE5M9JBEECH4ECL2594l453597DBW7GH73QDJK3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 259 STR:RPRED 100.0 SQ:SECSTR ccGGGGccTTEEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccccGGcccGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccEEEEEEccGGGTcHHHHHGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHHHHHHcHHHHHHHHHHHHcGGGTTccccEEEEcTTGGccGGGcccTT DISOP:02AL 1-4| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHcccccccHHHHHHHHHHHcccccccccEEEEEEccccccccccccccc //