[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55348.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  254/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   210->310 1d5yA PDBj 3e-08 30.7 %
:RPS:PDB   44->207 3bhnA PDBj 6e-22 12.5 %
:RPS:PDB   212->314 1bl0A PDBj 8e-19 25.2 %
:RPS:SCOP  3->187 1j42A  c.23.16.2 * 1e-12 18.4 %
:RPS:SCOP  173->313 1v4aA1  a.24.16.4 * 2e-16 12.1 %
:HMM:SCOP  1->188 1pe0A_ c.23.16.2 * 3e-39 37.5 %
:HMM:SCOP  208->259 1d5yA1 a.4.1.8 * 9.3e-11 32.7 %
:HMM:SCOP  262->312 1d5yA2 a.4.1.8 * 4.1e-11 35.3 %
:HMM:PFM   221->259 PF00165 * HTH_AraC 1.9e-09 28.2 39/42  
:HMM:PFM   271->310 PF00165 * HTH_AraC 2.7e-09 43.6 39/42  
:HMM:PFM   84->171 PF01965 * DJ-1_PfpI 1.3e-11 31.4 86/148  
:BLT:SWISS 2->136 YCP1_STRLI 1e-06 27.1 %
:BLT:SWISS 140->201 RBFA_FRASC 3e-04 30.6 %
:BLT:SWISS 212->311 YKGD_ECOLI 4e-09 32.0 %
:PROS 263->305|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55348.1 GT:GENE BAD55348.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 518752..519705 GB:FROM 518752 GB:TO 519705 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55348.1 LENGTH 317 SQ:AASEQ MQIAVYAFDGFPMFHLAVPLTVFGEVGRLGLAADWQTRLWSDRAGSVRTAEGYPIGDVAGPEILASADIVVVPSWLQSLAPAGDDLKNQLIDAHRRGATIAGLCFGAFPLADAGLLDGRAAVTHWEVLPLLAERRPDTSVDASVLYIDHGDVLTSAGTASAIDACLHLVRKHLGVAAATRVARSLVVAPHREGGQAQYIERPLARPATDGAIGEVLDWALAHLDHPLTVDLLAERARMSRRSFVRHFQQATGTTPARWILDRRLDEARALLETTDWPVDTIASACGFGSPVTLRQNFAAAYGTTPTTYRRRFAPTPA GT:EXON 1|1-317:0| BL:SWS:NREP 3 BL:SWS:REP 2->136|YCP1_STRLI|1e-06|27.1|133/141| BL:SWS:REP 140->201|RBFA_FRASC|3e-04|30.6|62/168| BL:SWS:REP 212->311|YKGD_ECOLI|4e-09|32.0|100/284| PROS 263->305|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 110->121|ladaglldgraa| SEG 260->272|ldrrldearalle| BL:PDB:NREP 1 BL:PDB:REP 210->310|1d5yA|3e-08|30.7|101/288| RP:PDB:NREP 2 RP:PDB:REP 44->207|3bhnA|6e-22|12.5|160/208| RP:PDB:REP 212->314|1bl0A|8e-19|25.2|103/116| HM:PFM:NREP 3 HM:PFM:REP 221->259|PF00165|1.9e-09|28.2|39/42|HTH_AraC| HM:PFM:REP 271->310|PF00165|2.7e-09|43.6|39/42|HTH_AraC| HM:PFM:REP 84->171|PF01965|1.3e-11|31.4|86/148|DJ-1_PfpI| RP:SCP:NREP 2 RP:SCP:REP 3->187|1j42A|1e-12|18.4|179/185|c.23.16.2| RP:SCP:REP 173->313|1v4aA1|2e-16|12.1|141/151|a.24.16.4| HM:SCP:REP 1->188|1pe0A_|3e-39|37.5|176/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 208->259|1d5yA1|9.3e-11|32.7|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 262->312|1d5yA2|4.1e-11|35.3|51/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 993 OP:NHOMOORG 256 OP:PATTERN -------------------------------------------------------------------- 1---A--1--1---511----5--17-----143337585-31632------211-----421-4-9DB8-1------------------------1--------922-4----------------------------------1-1--1----------------1----------------1-------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------2--6222-----23234---11-1-1111111-114-55345534681-44433278655561-122353122366--------3---2-----------------------------------1---1-15CHHGHD89997EEJIBCCB3CJEH5B43--335--21-3-224216---1131-------1---31-2---1--111--1-112---1------23-------------------------------111-2-31-21111---311-1112--1------1-------132-31-22--------2--1----1-2--------3531-33-----------------3--1----1-1--------------1----------1515---1--------------1-----21-666648CF788782645--------------111-1111111111-11------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 313 STR:RPRED 98.7 SQ:SECSTR #EEEEEEcTTccHHHHHHHHHHHHHTTcEEEEEETTccccEEccccEEEcTTcEEEccEEGGGGGGccEEEEcccTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEcEEcEccccEEEETTEEEEccGGGHHHHHHHHHHHHccHHHHHHHHTTTccTTcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcccc### DISOP:02AL 313-317| PSIPRED cEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEcccccEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHccccccEEEEcHHHHHHHHHHcccccccccEEEEEccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccc //