[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55356.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  572/915 : Eukaryota  124/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:264 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->244 1vl8B PDBj 4e-16 26.4 %
:RPS:PDB   25->219 1a9zA PDBj 1e-21 7.2 %
:RPS:SCOP  25->244 1pwxA  c.2.1.2 * 7e-25 18.3 %
:HMM:SCOP  5->244 1zemA1 c.2.1.2 * 5.6e-73 40.6 %
:RPS:PFM   25->171 PF00106 * adh_short 2e-09 32.2 %
:HMM:PFM   11->172 PF00106 * adh_short 3.4e-35 31.2 157/167  
:BLT:SWISS 52->253 DHG2_BACME 9e-15 25.7 %
:PROS 141->169|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55356.1 GT:GENE BAD55356.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 526054..526848 GB:FROM 526054 GB:TO 526848 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55356.1 LENGTH 264 SQ:AASEQ MGLEIDLSDRVVLVTGGVRGVGAGISRAFLAAGATVVACARRPGEQPVTYEGRQAHFLPCDVRDAAAVRALIETLVDTHGRLDHVVNNAGGAPFASAATASVNFHTKIIELNLMSALWVSQAANVVMQDQPEGGSILMISSLSGHRPSPGTAAYGAAKAGVDSLTQSLSMEWAPKVRVNSLIVGPVETELSELHYGDRDGIEAVGATIPLGRLARPEDVGRAAAFLASPLAAYISGAMLQVHGGGERPPFLAASTAANGEQQRA GT:EXON 1|1-264:0| BL:SWS:NREP 1 BL:SWS:REP 52->253|DHG2_BACME|9e-15|25.7|202/261| PROS 141->169|PS00061|ADH_SHORT|PDOC00060| SEG 11->24|vvlvtggvrgvgag| SEG 89->101|aggapfasaatas| SEG 133->144|ggsilmisslsg| SEG 222->232|aaaflasplaa| BL:PDB:NREP 1 BL:PDB:REP 25->244|1vl8B|4e-16|26.4|220/252| RP:PDB:NREP 1 RP:PDB:REP 25->219|1a9zA|1e-21|7.2|194/338| RP:PFM:NREP 1 RP:PFM:REP 25->171|PF00106|2e-09|32.2|146/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 11->172|PF00106|3.4e-35|31.2|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 25->244|1pwxA|7e-25|18.3|218/252|c.2.1.2| HM:SCP:REP 5->244|1zemA1|5.6e-73|40.6|239/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1892 OP:NHOMOORG 719 OP:PATTERN --1-1--1-------1-111----4113-112------------1-1---11------1-1---1-12 216-6--1---11-37633-37--2C44444269CA7AJI361D5422133-533111--557-447A474--------111A-------1-----1--2111126232211111111111111---111-1-1--344452211112142111-11---111-2126352--11-----1--241223215233333333424333333244323336675542211111352--------------3111311-1221----111112222-2------------------------------------------------2--121111--1--11-----11--1--13--1-111-1123222133--3-34444-----2-668---3233312221122226-44333846586-611213669585671333237476114--------4332-253--------1--------------------218A2-21116978BB5322227795333313C5C2GB4114425-2314542561-11-333--------1-2---1421---1-----1-1-1-2--3---1134-11-------------------111-1222111123-33-11212115121132422----1-212------22132413342322223-43322322324222232213331-1-3422222322312222232222222---11111111111----------1---2153111314-1111-11123353221225132111333112212135----------1112-----12---21121222221------1332222----------1-------------------------212-122232-41 -------------1223-213216473-11112221-413223222---313553212221112-----1----2-----1111-1---2423-2122211-121--31-8123213-1-1-1-11-1-272-312----1--3--3--22-1--3226124-5111----112222---1113-344623111----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 97.3 SQ:SECSTR ccccTGcTTcEEEEcccccHHHHHHHHHHHHTTcEEEEEEcccccHHHHHHHTcccEEEEccTTcHHHHHHHHHHTTccEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTccEEEEEEEGGTGGcccccccccTTccccccccHHHHHHHHHHHHHHHHHHHcTTcEEEEEEcEEEcccTTcccccccccccccHHHHHHHHHTTccccEEEHHHHHHcGGGTTccccEEEEccccccccccTTcHHH####### DISOP:02AL 1-4, 253-264| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccHHccc //