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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55357.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  869/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:302 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->257 1zbqA PDBj 1e-38 43.5 %
:RPS:PDB   7->260 2ae1A PDBj 3e-27 18.0 %
:RPS:SCOP  7->288 1a27A  c.2.1.2 * 5e-26 19.5 %
:HMM:SCOP  1->257 1zemA1 c.2.1.2 * 4.5e-64 40.6 %
:RPS:PFM   9->172 PF00106 * adh_short 7e-14 40.7 %
:HMM:PFM   10->190 PF00106 * adh_short 9.7e-36 30.9 165/167  
:BLT:SWISS 9->257 FOX2_CANTR 4e-41 41.2 %
:PROS 159->187|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55357.1 GT:GENE BAD55357.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 526898..527806 GB:FROM 526898 GB:TO 527806 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55357.1 LENGTH 302 SQ:AASEQ MDEQICAGRVVIVTGAGRGIGRAHALAFAAAGARVVVNDVGTSLHGDSTGETPAQQVVGEITAAGGEAVANGDDVADWDGARNLIRQAVDTFGRLDVLVNNAGFVRDRMLVNLSEEEWDAVIRVHLKGHFATMRHAAEYWRGEAKAGRPVDARVINTSSGAGLQGSVGQANYGAAKAGIAGLTLTAAAEFARYGVTVNAIAPSARTRMTETVFADMMAKPESGFDAMAPENISPLVVWLGSTQSAGVTGRMFEVEGGKVALADGWRHGVAVDRGARWNPAELGPVVADLIAKAAPPEPVYGA GT:EXON 1|1-302:0| BL:SWS:NREP 1 BL:SWS:REP 9->257|FOX2_CANTR|4e-41|41.2|233/906| PROS 159->187|PS00061|ADH_SHORT|PDOC00060| SEG 23->33|ahalafaaaga| SEG 173->188|gaakagiagltltaaa| BL:PDB:NREP 1 BL:PDB:REP 35->257|1zbqA|1e-38|43.5|207/302| RP:PDB:NREP 1 RP:PDB:REP 7->260|2ae1A|3e-27|18.0|239/252| RP:PFM:NREP 1 RP:PFM:REP 9->172|PF00106|7e-14|40.7|150/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 10->190|PF00106|9.7e-36|30.9|165/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 7->288|1a27A|5e-26|19.5|267/285|c.2.1.2| HM:SCP:REP 1->257|1zemA1|4.5e-64|40.6|239/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 6849 OP:NHOMOORG 1098 OP:PATTERN --1-122522322222-41---115115132522---------11-32--522-11----2-223-11 77E1J2-3337131RWLDD-DV33LcDCDDDHSZhaJb*k3Q5b6A732751DB9545118CJ178DJKI911111111173L11111122312111--326346I4F3811111111111111231113211132B999A222A9447921211221113221419769211111111111196344541A2999A9AAAC89AAABAA799B899A6DBCDA6566544AM4444443333444338776631813414-1-2433232235564443332222222111111111112322333333333111111111433567555343353563442575322114611273123114332224413617O77H1111183dIM335GCFFF99A988A9AAF-99B88N8BFQI1VJJAIHLVNRMNHI9E8B6FE6AC95933333333B76846651111111111-12233122112112111149OUC56PLEHRLMRRM99899IIURAAAA5AdHaFfSM45HGDB899ADBSAJL6744313641221111123H753J463111113222124529225445246F2112111111111111111111111113366828675B7344444299555463745541-2333511-11188874A46884655566-8566545666846656657DFD843365445556556545455E4534436-15555555555551-1312111867727BC91113251111113529A8AB37366E5EFCFCJDPDDEGHDGFH211111111123394344358478777676644453331141665444--------1-2----------1--------------2331154565261 11--236-1-1-257ADEA99F9I8FB78554658559796B967548799GMM48479866112122111111211111111111-3-7RBD7I75553735663-692X4733431-1124233-319J3-335122132281221-3411223139BDA3C62524738B482433U111252ABS8F334C5553 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 99.3 SQ:SECSTR ccGGGGTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccTTHEEcGccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHGTTccEEGTcEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGHHHccccccEEEcccTTHHHHHTTTccTEEEEEccccccE## DISOP:02AL 1-2, 297-302| PSIPRED cccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHcccccEEEEEcccEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccc //