[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55367.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  43/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   190->303 1ulqC PDBj 3e-06 32.4 %
:RPS:PDB   187->340 2c7yA PDBj 3e-10 22.1 %
:RPS:SCOP  192->326 1eblA2  c.95.1.2 * 2e-07 16.4 %
:HMM:SCOP  2->214 1wdkC1 c.95.1.1 * 5.4e-09 21.2 %
:HMM:SCOP  213->339 1afwA2 c.95.1.1 * 1.1e-14 29.3 %
:HMM:PFM   236->306 PF02803 * Thiolase_C 7.5e-08 32.9 70/123  
:BLT:SWISS 184->321 Y793_METTH 1e-13 41.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55367.1 GT:GENE BAD55367.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(537157..538197) GB:FROM 537157 GB:TO 538197 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55367.1 LENGTH 346 SQ:AASEQ MTDNATDIAVVGFAHAPHVPETYGTTNGVEMLVPCFQQLYTELGITKSDIDFWCSGSSDYLAGRAFSFISAVDSIGAVPPINESHVEMDAAWALYEAFVKLESGQARTALVYGFGKSSAGTLRQVLTMQLDPYLVAPLWPDALSIAGLQARAGIDAGRWSERDMAAVAAGAGGDVDSLLDAPYVADPLRAHDVAPITDGAAAIVLAVGDRARELCERPAWITSMAHRIDTPVLGARDLTVSPSTAKAAQEATGGDLSGFDIAELHAPFSHQQLILAEAIGLKPETTVNPSGGALAANPMFAAGLERIGFAARAIMTGTAGRALAHATSGPALQQNLVTVLDSEASR GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 184->321|Y793_METTH|1e-13|41.7|132/383| SEG 165->181|aavaagaggdvdsllda| BL:PDB:NREP 1 BL:PDB:REP 190->303|1ulqC|3e-06|32.4|111/399| RP:PDB:NREP 1 RP:PDB:REP 187->340|2c7yA|3e-10|22.1|149/391| HM:PFM:NREP 1 HM:PFM:REP 236->306|PF02803|7.5e-08|32.9|70/123|Thiolase_C| RP:SCP:NREP 1 RP:SCP:REP 192->326|1eblA2|2e-07|16.4|128/143|c.95.1.2| HM:SCP:REP 2->214|1wdkC1|5.4e-09|21.2|208/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 213->339|1afwA2|1.1e-14|29.3|123/124|c.95.1.1|2/2|Thiolase-like| OP:NHOMO 112 OP:NHOMOORG 75 OP:PATTERN 11---11-111111----111--31111---11-1--------11-11111111-1------------ ----1---------43222-23--2222222222322112-2----------1-1-----222----1-2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------------------------------------1-----------------------------------------------------------------11-1-----------------------2--2----------------------------------------31---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 159 STR:RPRED 46.0 SQ:SECSTR ######################################################################################################################################################################################HccTccccccccccEEEEEEEEEEEHHHHHHHTcccEEEEEEEEEEccGGGGGGGTTcHHHHHHHHHHHTTccGGGccEEEEccccHHHHHHHHHHHTccGGGGccTTccHHHcccGGGHHHHHHHHHHHHHHHHcTTccEEEEEEEccTTEEEEEEEE##### DISOP:02AL 1-3, 345-346| PSIPRED ccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccHHHcccEEEEEcccccccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHccccccccHHHHccccccccEEEEEEEcHHHHHHcccccEEEEEEEEEEcccccccccccccHHHHHHHHHHHcccHHHEEEEEEEcccHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEHHHHHccEEEEEcccccc //