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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55368.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  32/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:322 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->111 2gnrA PDBj 9e-06 31.2 %
:BLT:PDB   176->255 2gnrA PDBj 3e-05 25.6 %
:RPS:SCOP  18->132 2gnrA1  b.40.4.15 * 3e-07 20.3 %
:RPS:SCOP  162->296 2gnrA1  b.40.4.15 * 5e-17 19.1 %
:RPS:PFM   69->133 PF01796 * DUF35 9e-07 41.5 %
:RPS:PFM   191->216 PF12172 * DUF35_N 7e-05 57.7 %
:RPS:PFM   226->289 PF01796 * DUF35 4e-05 42.2 %
:HMM:PFM   69->132 PF01796 * DUF35 1.9e-15 33.3 63/68  
:HMM:PFM   226->290 PF01796 * DUF35 3.9e-14 37.5 64/68  
:HMM:PFM   190->213 PF12172 * DUF35_N 5.3e-05 54.2 24/37  
:BLT:SWISS 39->128 ACAC_PYRFU 1e-07 29.2 %
:BLT:SWISS 196->290 Y1552_METJA 2e-08 39.8 %
:REPEAT 2|9->150|167->310

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55368.1 GT:GENE BAD55368.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(538210..539178) GB:FROM 538210 GB:TO 539178 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55368.1 LENGTH 322 SQ:AASEQ MSTSTAPDVLSAPLRMRFDYTRSVGPTIGRFLTGLRARKIVGVRGSDGRVLVPPPEYDPVTSEALTEFVDVADTGTVSTWTWVRDPLPGQPFDRPFAWALITLDGADSALLHAVDVDSPDQMRTGMRVRARWAEQTEGFIKDIVCFEPGETSTAPAAPVDEGEPVTMITTPVDLSYKHTASPQETVYLRGLAEGKLIGARTDAAGKVYFPPRGANPTDGRPTEDYIELSDHGTVTTFCIVNVPFLGQRIKPPYVAAYVLLDGADIPVLHLVLGCDASEVRMGMRVKAVWKPREQWGHGLENVDHFEPSGEPDADYETYKHHL GT:EXON 1|1-322:0| BL:SWS:NREP 2 BL:SWS:REP 39->128|ACAC_PYRFU|1e-07|29.2|89/136| BL:SWS:REP 196->290|Y1552_METJA|2e-08|39.8|93/141| NREPEAT 1 REPEAT 2|9->150|167->310| BL:PDB:NREP 2 BL:PDB:REP 17->111|2gnrA|9e-06|31.2|93/136| BL:PDB:REP 176->255|2gnrA|3e-05|25.6|80/136| RP:PFM:NREP 3 RP:PFM:REP 69->133|PF01796|9e-07|41.5|65/66|DUF35| RP:PFM:REP 191->216|PF12172|7e-05|57.7|26/36|DUF35_N| RP:PFM:REP 226->289|PF01796|4e-05|42.2|64/66|DUF35| HM:PFM:NREP 3 HM:PFM:REP 69->132|PF01796|1.9e-15|33.3|63/68|DUF35| HM:PFM:REP 226->290|PF01796|3.9e-14|37.5|64/68|DUF35| HM:PFM:REP 190->213|PF12172|5.3e-05|54.2|24/37|DUF35_N| RP:SCP:NREP 2 RP:SCP:REP 18->132|2gnrA1|3e-07|20.3|111/137|b.40.4.15| RP:SCP:REP 162->296|2gnrA1|5e-17|19.1|131/137|b.40.4.15| OP:NHOMO 58 OP:NHOMOORG 47 OP:PATTERN 22----1111111111--2----3-----------------------------1-------------- ----1---------31111-11--1111111111111112-1------------------111----1-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------4------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 173 STR:RPRED 53.7 SQ:SECSTR ################HHHHH##cHHHHHHHHHHHHTTccEEEEcTTccEEEccccEETTTTEEccEEEEcGGGcEEEEEEEEEEcTTccEEEEEEEEEEEEcTTcEEcEE################################################################HHHHcHHHHHHHHHHHHTTccEEEEcTTTccEEEccccEETTTTEEccEEEEccGGcEEEEEEEEEEcTTccEEEEEEEE################################################################### DISOP:02AL 1-3, 154-158, 316-317| PSIPRED cccccccccEEcccEEEEEEEccccccHHHHHHHHHcccEEEEEEcccEEEEcccccccccccccccEEEccccEEEEEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEcccHHHcccccEEEEEEEEccccccccEEEEEcccccccccccccccccEEEEccccEEEEEccccHHHHHHHHHHHcccEEEEEEccccEEEEccHHHccccccccccEEEEcccEEEEEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEcccHHHcccccEEEEEEEEcccccccccEEEEEEEcccccccHHHHHHcc //