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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55371.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  229/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13d.17.4
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->208 1or7A PDBj 1e-08 31.6 %
:RPS:PDB   33->205 3dxjF PDBj 1e-17 12.3 %
:RPS:PDB   216->346 2bngC PDBj 3e-10 19.2 %
:RPS:SCOP  33->94 1h3lA  a.177.1.1 * 2e-18 33.9 %
:RPS:SCOP  155->203 1k78A1  a.4.1.5 * 5e-04 18.4 %
:RPS:SCOP  216->317 1c7hA  d.17.4.3 * 1e-08 16.7 %
:HMM:SCOP  6->119 1or7A2 a.177.1.1 * 8.6e-21 27.4 %
:HMM:SCOP  142->209 1or7A1 a.4.13.2 * 4.7e-08 32.4 %
:HMM:SCOP  203->338 1m98A2 d.17.4.6 * 3.4e-17 25.4 %
:RPS:PFM   44->102 PF04542 * Sigma70_r2 3e-08 52.7 %
:RPS:PFM   151->200 PF08281 * Sigma70_r4_2 7e-06 42.0 %
:HMM:PFM   33->94 PF04542 * Sigma70_r2 1.2e-22 37.1 62/71  
:HMM:PFM   151->203 PF08281 * Sigma70_r4_2 2.7e-14 37.7 53/54  
:HMM:PFM   223->275 PF02136 * NTF2 1.2e-05 32.1 53/118  
:BLT:SWISS 34->205 SIGW_BACSU 3e-12 29.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55371.1 GT:GENE BAD55371.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(542060..543103) GB:FROM 542060 GB:TO 543103 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD55371.1 LENGTH 347 SQ:AASEQ MSDSTVAASPATPGASVAAAGAPGADADVLASFEAHRRELCAYAYRMLGSSFEAEDAVQETFTRAWKSYGSFEGRASLRSWLYRIATNVCLDMLDGPQRRARPMDLSGPSRPDSPLPAPQPDYVWVEPIPNALAFGADPAEHAATKDSLRLAFVAACQHLPATQRAILIMREVLRFSANETAEALTMSPASVNSALQRARATMSKVRPTATDDYDETDENQRKLVDEFVTAFEAYDMDALTALLKADVALSMPPIELWVRGPENVAAFMRGHGSGCEGSRMVRLEGANGLPAFGHYKRTDTPGVYAPWSITVLEFDGPVISGLNFFLDTERLFPLFGLPMELREPAS GT:EXON 1|1-347:0| BL:SWS:NREP 1 BL:SWS:REP 34->205|SIGW_BACSU|3e-12|29.1|158/187| SEG 4->29|stvaaspatpgasvaaagapgadadv| BL:PDB:NREP 1 BL:PDB:REP 51->208|1or7A|1e-08|31.6|136/181| RP:PDB:NREP 2 RP:PDB:REP 33->205|3dxjF|1e-17|12.3|154/349| RP:PDB:REP 216->346|2bngC|3e-10|19.2|130/138| RP:PFM:NREP 2 RP:PFM:REP 44->102|PF04542|3e-08|52.7|55/70|Sigma70_r2| RP:PFM:REP 151->200|PF08281|7e-06|42.0|50/54|Sigma70_r4_2| HM:PFM:NREP 3 HM:PFM:REP 33->94|PF04542|1.2e-22|37.1|62/71|Sigma70_r2| HM:PFM:REP 151->203|PF08281|2.7e-14|37.7|53/54|Sigma70_r4_2| HM:PFM:REP 223->275|PF02136|1.2e-05|32.1|53/118|NTF2| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 3 RP:SCP:REP 33->94|1h3lA|2e-18|33.9|62/75|a.177.1.1| RP:SCP:REP 155->203|1k78A1|5e-04|18.4|49/63|a.4.1.5| RP:SCP:REP 216->317|1c7hA|1e-08|16.7|102/123|d.17.4.3| HM:SCP:REP 6->119|1or7A2|8.6e-21|27.4|113/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 142->209|1or7A1|4.7e-08|32.4|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 203->338|1m98A2|3.4e-17|25.4|134/142|d.17.4.6|1/1|NTF2-like| OP:NHOMO 463 OP:NHOMOORG 230 OP:PATTERN -------------------------------------------------------------------- 226-L1-11111--34433-33115333333333337265122528-11---121--1--532-3367961---------1---------1---------------1---------------------1-----1-32242---4-1-1----11-----------1------------------------211---------------121111--1-2211--------46---------------------------------------------------------------------------------------------------------1---------1--4--11--1-2211-2----1--3-1-111-----1-4221-211-11----------1-122-11---61-2111321122111-111--11-11--1------------------------------------------------21-233311222111111111-211111111----1-1---1--11-1342-11--------------1--1-1----------------1----11-745655-2-----------------------------1--1--1------------------------111--------1--------------------------------------------------------------------------------------------------1---11-1-----11-------1----1-----121----------------------1-----1111111-1-11-----------------------------------------------------1----------3- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 311 STR:RPRED 89.6 SQ:SECSTR ################################HHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHcccccccHcccccccc###THHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHccccccTTccHHHHHHHHHHHHHHHHHHTcHHHHHHHEEEEEEEEETTTEcEEEcHHHHHHHHHTTTcEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEccHHHHHHHHHHHHHTTcGG# DISOP:02AL 1-16, 206-220, 343-347| PSIPRED cccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHccHHHEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEcccccccEEEEEEEEEEEcccEEEEEEEEEccHHHHHHccccHHHccccc //