[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55379.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  868/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:317 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->262 1zbqA PDBj 4e-32 43.9 %
:RPS:PDB   53->264 1dohB PDBj 6e-23 24.5 %
:RPS:SCOP  53->268 1bdbA  c.2.1.2 * 4e-24 15.0 %
:HMM:SCOP  22->265 1zemA1 c.2.1.2 * 6.8e-61 43.6 %
:RPS:PFM   62->190 PF00106 * adh_short 2e-15 42.6 %
:HMM:PFM   28->200 PF00106 * adh_short 9.3e-36 35.2 162/167  
:BLT:SWISS 53->262 DHB4_HUMAN 1e-31 43.9 %
:PROS 170->198|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55379.1 GT:GENE BAD55379.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 549897..550850 GB:FROM 549897 GB:TO 550850 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55379.1 LENGTH 317 SQ:AASEQ MSDACRSVGTRSKVGPVSESNLSLAGRVALVTGAGAGLGKAEALALAAAGAAVVVNDLAENDAVAETMAEIRARGAKAEFVAGSIAERATADAMIRTAQESFGSVDIVVNNAGITRDRMLFNMSDEEFDAVVAVHLRGHFLLTRNAAAYWRAKSKEAGAPVYGRLINTSSEAGLLGPEGQANYGAAKAGITALTLSAARALSRYGVRANAIAPRARTAMTAAVFSDAPEGGIDPLSPDHVARLVAYLASPAAEAVSGQLFVVYGPMVALMAAPVVEQRFDAAGEAWDATELASTLSGYFADRPAGRTFSASALTELG GT:EXON 1|1-317:0| BL:SWS:NREP 1 BL:SWS:REP 53->262|DHB4_HUMAN|1e-31|43.9|196/736| PROS 170->198|PS00061|ADH_SHORT|PDOC00060| SEG 24->52|lagrvalvtgagaglgkaealalaaagaa| SEG 191->203|taltlsaaralsr| BL:PDB:NREP 1 BL:PDB:REP 53->262|1zbqA|4e-32|43.9|196/302| RP:PDB:NREP 1 RP:PDB:REP 53->264|1dohB|6e-23|24.5|204/271| RP:PFM:NREP 1 RP:PFM:REP 62->190|PF00106|2e-15|42.6|122/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 28->200|PF00106|9.3e-36|35.2|162/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 53->268|1bdbA|4e-24|15.0|207/267|c.2.1.2| HM:SCP:REP 22->265|1zemA1|6.8e-61|43.6|234/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 5856 OP:NHOMOORG 1096 OP:PATTERN --1-112322222121-2-1---15114122411---------11-22--221-11----2-2-3--1 8672K2-2337131HMJBB-BP22GVBABBBDKSWTJbhb4H4X26532541A89435118BI1B5AHGE5-111--11151O11111344412111--329244D4G23111111111111112111231112219889A2227825642121122111222121764A211111111111155244331B19777779797787997A788787677CB7C853333325I3333332333333326445661414314-1-4644452332353234342434233222222222223433434444444122111222523467333222242442442464422-15522254112214333333312616M77H11111B3YHI345KCEGD6585558688F-66D44N7ACPI1REECHGJRJPLNEJ6A7B5HB57B65722222222CCA636461111111111112233122112112111128MZA38LJBGOGGKLJ89899DDUO98995CRIZIgUO44ECDB7A88ECL8MO6542212531111111123D653D263111113222124329325465454E311211111111112111111111111445452658575136546368544465734451-1333511-11167764946665655555-6565545566645546544999313265344445445434344A3334434114555555555551113111116556268C71114141111112417789746354B4BEBC9H9HA58A7CEAB111111111123394344348367676676644433331121446533--------1-2----------1--------------2231153545271 11--225-312-1278A7688B6E8E54533233633535255454348877BB47477766112111111111211111111112---5KAA4D43331324443-392B593343-121333231329F3-335222252342122133113343298BA39824435255532542M1112428AF5E212A4543 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 83.6 SQ:SECSTR ####################################################EEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcGEEEEEGGEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEccccHHHHHHGGGGcTTcTTccHHHHHHHHHHHHHcGGGTTccccEEEEccTGGGccHcTHHHHHHHHHHccTTccEEEEEEcccGGGccTTcEEEEEEEETTE DISOP:02AL 1-23, 275-285| PSIPRED ccccccccHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHcccccEEEEEccHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccEEEHHHHHHcc //