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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55401.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  711/915 : Eukaryota  6/199 : Viruses  11/175   --->[See Alignment]
b.71.1b.84.3
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   205->321 2hsiB PDBj 6e-18 40.2 %
:RPS:PDB   205->321 2b13A PDBj 3e-26 36.8 %
:RPS:SCOP  219->319 2fhbA4  b.71.1.1 * 1e-26 10.9 %
:HMM:SCOP  149->319 1qwyA_ b.84.3.2 * 8.9e-46 38.0 %
:RPS:PFM   221->311 PF01551 * Peptidase_M23 6e-22 56.0 %
:HMM:PFM   220->315 PF01551 * Peptidase_M23 1e-33 50.0 96/96  
:HMM:PFM   133->173 PF11226 * DUF3022 0.00031 32.5 40/111  
:BLT:SWISS 222->315 YEBA_SHIFL 2e-17 43.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55401.1 GT:GENE BAD55401.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(571129..572109) GB:FROM 571129 GB:TO 572109 GB:DIRECTION - GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD55401.1 LENGTH 326 SQ:AASEQ MVGVMLDKARRAGLDRVREAGGIVVVPPDWRTRARPRTTAAGRDLTALWRRARREARALRRGPRPDPRRWWTEQKKAEYRALLRTHKWLIAGLAAVLLVAAADGVASRPGTGPLGPNEAQRVFFAHPQQFQSTPPSVRRYLNAIANGERLREQAVVAAAARATLERAKAEAAAAAAGEWQPWINEPGTVIVPGSVIPDISGFVLPARGMFTSGFGSRWGTFHNGIDVAGPIGTPIYAVAAGTVIDAGPAQGFGLWVRIRHDDGAITVYGHMYDFFVSVGERVPAGMQIARMGNRGDSTGPHLHFEVIVNGRHVDPRAWLAARGLSY GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 222->315|YEBA_SHIFL|2e-17|43.6|94/440| TM:NTM 2 TM:REGION 84->106| TM:REGION 176->198| SEG 31->43|rtrarprttaagr| SEG 47->69|alwrrarrearalrrgprpdprr| SEG 91->106|aglaavllvaaadgva| SEG 148->176|erlreqavvaaaaratlerakaeaaaaaa| BL:PDB:NREP 1 BL:PDB:REP 205->321|2hsiB|6e-18|40.2|112/228| RP:PDB:NREP 1 RP:PDB:REP 205->321|2b13A|3e-26|36.8|117/131| RP:PFM:NREP 1 RP:PFM:REP 221->311|PF01551|6e-22|56.0|91/96|Peptidase_M23| HM:PFM:NREP 2 HM:PFM:REP 220->315|PF01551|1e-33|50.0|96/96|Peptidase_M23| HM:PFM:REP 133->173|PF11226|0.00031|32.5|40/111|DUF3022| RP:SCP:NREP 1 RP:SCP:REP 219->319|2fhbA4|1e-26|10.9|101/118|b.71.1.1| HM:SCP:REP 149->319|1qwyA_|8.9e-46|38.0|171/270|b.84.3.2|1/1|Duplicated hybrid motif| OP:NHOMO 2354 OP:NHOMOORG 728 OP:PATTERN -------------------------------------------------------------------- 112-131322211111122-241121222221212267AA1--1-2112351544122--437-222786-------------2-522564535112--1222331112----------------1223133413211112---42K534564433312233234566666-3-----3----32232223-2-44444343353554332111144411141652---1-721112121121111111----2----------------------12-111-----------------------------------------454--22222221213-11-343215-1721747545445426565531-32-433222222223333333333333333333334-334434343451433333333333325453211111111-------------33411----------22222222212211-1125654345556433334234443336444435334344422222324443232444432444442222222343344334323255624445363143434555564311223344443323322221233222116523346454365555656645555576551-2435511----45333434434444544-4544444445444444443434333334444444434444444444344443143333333333322353222222221363512133333322333333333311115566665555655557555---------255667667687755555565544455452-348888774444445455--------------------------1111111111--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------6--1--1--1---- -1--------------------------------------------------------------------------------1---------------------11--1----1--------1---1-------111-------------------------------------- STR:NPRED 133 STR:RPRED 40.8 SQ:SECSTR #################################################################################################################################################################################################EEcccccTHHHcccHHHHTccEEEcccEEccEEEEccTTcEEEccccEEEEEEEEcccccEEEEEEETTccEEEEEEEccccccTTcEEcTTcEEEEccccccccccEEEEEEEEcccEEccHHHHccccccH DISOP:02AL 6-7, 13-17, 34-40, 54-83, 107-193| PSIPRED cEEEEEEcccccHHHHHHccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEcccccccccccEEEEccccccccEEEccccEEEEEEEcccccEEEEEEEcccEEEEEEEcccHHcccccEEEcccEEEEEcccccccccEEEEEEEEccEEEccHHHHHHccccc //