Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55408.1
DDBJ : putative protease
Swiss-Prot:
Homologs Archaea 10/68 : Bacteria 401/915 : Eukaryota 111/199 : Viruses 0/175 --->[See Alignment]
b.69.7
c.69.1
:716 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 22->690 2bklB PDBj 1e-60 31.2 %
:RPS:PDB 154->245 2bbkH PDBj 2e-06 13.0 %
:RPS:PDB 282->397 3d9bA PDBj 7e-04 20.2 %
:RPS:PDB 479->716 1e5tA PDBj 3e-38 31.5 %
:RPS:SCOP 3->440 1e5tA1 b.69.7.1 * 1e-27 17.2 %
:RPS:SCOP 443->714 1e5tA2 c.69.1.4 * 2e-79 35.3 %
:HMM:SCOP 3->443 1qfmA1 b.69.7.1 * 2.3e-100 37.7 %
:HMM:SCOP 443->715 1sfrA_ c.69.1.3 * 8.2e-39 26.5 %
:RPS:PFM 16->429 PF02897 * Peptidase_S9_N 7e-82 49.0 %
:RPS:PFM 505->694 PF00326 * Peptidase_S9 3e-26 42.1 %
:HMM:PFM 10->436 PF02897 * Peptidase_S9_N 1.2e-114 40.2 396/415
:HMM:PFM 496->713 PF00326 * Peptidase_S9 6.1e-67 43.8 210/213
:BLT:SWISS 10->714 PTRB_MORLA e-135 39.7 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55408.1
GT:GENE BAD55408.1
GT:PRODUCT putative protease
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 578346..580496
GB:FROM 578346
GB:TO 580496
GB:DIRECTION +
GB:PRODUCT putative protease
GB:PROTEIN_ID BAD55408.1
LENGTH 716
SQ:AASEQ MSVESGVAAPIAKRVPTERVHHGDVFVDEYEWLRDKENPEVIAYLEAENAYTEAQTAHLSGLREKIFEEIKSRTQETDLSVPTRMGEYWYYSRSFEGKQYGVHCRCPIDTTADAAAAWNPPQLEAEGEIPGEEVLLDSNELAEGHEFFALGAFSVSHDGTLLAYSVDTVGDERYTLRIKDLRTGELLADEIAGTAPGATWSLDGTHVFYQTVDESWRPDTVWRHRLGTGTDADVRVFHEPDERYWVSIGATRSEKYLMIWVGSKITTEGWVLESDDPEGEFRVLLPRREGVEYSAEHAVIGGQDRFLILHNDVVDGVKAQNFVLAEASVDNPADLRILIGHRDDVRLEDIDAFADHLVLSYRREALTRLAVWPLTETGYGDLRELEFDLELFAVGMGGNPEWAQPTLRLGLTSFITPMRVYDYVPATGELLLRKEQPVLGGYDAGDYRQRREWAVAADGTRVPISLVWKTGVADPGVEPRPLLLYGYGSYEASMDPSFSVARLSLLDRGMVFAVAHVRGGGEMGRLWYENGKTLTKKNTFTDFVACARHLIDTGVTAPDRLVADGGSAGGLLMGAVANLAPELFAGILANVPFVDPLTSILDPSLPLTVIEWDEWGNPLADKDVYEYMKSYSPYENVEAKDYPAILAITSLNDTRVLYVEPAKWVAKLRATKTGDAPLLLKTEMSAGHGGVSGRYAKWKEVAFEYAWVLDTAGLGE
GT:EXON 1|1-716:0|
BL:SWS:NREP 1
BL:SWS:REP 10->714|PTRB_MORLA|e-135|39.7|675/690|
SEG 381->392|dlrelefdlelf|
BL:PDB:NREP 1
BL:PDB:REP 22->690|2bklB|1e-60|31.2|619/677|
RP:PDB:NREP 3
RP:PDB:REP 154->245|2bbkH|2e-06|13.0|92/355|
RP:PDB:REP 282->397|3d9bA|7e-04|20.2|114/1045|
RP:PDB:REP 479->716|1e5tA|3e-38|31.5|238/710|
RP:PFM:NREP 2
RP:PFM:REP 16->429|PF02897|7e-82|49.0|382/396|Peptidase_S9_N|
RP:PFM:REP 505->694|PF00326|3e-26|42.1|183/208|Peptidase_S9|
HM:PFM:NREP 2
HM:PFM:REP 10->436|PF02897|1.2e-114|40.2|396/415|Peptidase_S9_N|
HM:PFM:REP 496->713|PF00326|6.1e-67|43.8|210/213|Peptidase_S9|
GO:PFM:NREP 4
GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF02897|IPR004106|
GO:PFM GO:0006508|"GO:proteolysis"|PF02897|IPR004106|
GO:PFM GO:0006508|"GO:proteolysis"|PF00326|IPR001375|
GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF00326|IPR001375|
RP:SCP:NREP 2
RP:SCP:REP 3->440|1e5tA1|1e-27|17.2|412/430|b.69.7.1|
RP:SCP:REP 443->714|1e5tA2|2e-79|35.3|266/280|c.69.1.4|
HM:SCP:REP 3->443|1qfmA1|2.3e-100|37.7|406/430|b.69.7.1|1/1|Peptidase/esterase 'gauge' domain|
HM:SCP:REP 443->715|1sfrA_|8.2e-39|26.5|257/0|c.69.1.3|1/1|alpha/beta-Hydrolases|
OP:NHOMO 929
OP:NHOMOORG 522
OP:PATTERN ------1--------1--------------1-----------------------1111111------- 3321112222211121222-22112332232132222222111223311221222111-1111-111--121111111---------------------3231232-2-1---------------11-11111-1111111-----111111-11-----------42211------------1-1-----1---------------------------------------------------------------------------------------------1---111---11------------------------------------------------------------------1---------1-13334111111122211-1211211111111111-11211212131-21112242221111232------------------1113--2-----------1111121221-2222----1232221----11111111111111-1111-1111---------1--------1--------2-1111111------2---------------------------42-----------------------------3312--331313233311233332334322--1-11-------11111111112111111-11111111111111111111111111111111111111111113--111111-111111111111---3------------1--------------------------1-11111111111111111-----------221111114422222222222221111------------------2--------------------------------------1- ----224-634-556--1----------------------------------1------------------------------------111-1112-2-111111-2944363342212122134172BE41433213262212222112225222221121-111211---22-352H111458588-582343534 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 709
STR:RPRED 99.0
SQ:SECSTR #######ccccccccccEEEETTEEEEcTTGGGGcTTcHHHHHHHHHHHHHHHHHHHTcTTHHHHHHHHHHHHHcccEEcccEEETTEEEEEEEcTTccccEEEEEEcTccTccEEEEEccEEEEETTTcccEEEEcGGGcccccccEEEEEEEEcTTccEEEEEEEETTccccEEEEEETTTccccccccccccTccEEcTTccccTTccGGGGGGGcEEEEEETTccGGGcEEEEcccccTTcEEEEEEcTTcccEEEEEEETTTEEEEEEEcTTccccEEEEEcccccEEEEEEEEETEEEEEEEEEcHETTcccEEEccccccEEEEEEEEETTTGGGTTEEccccEEcTTcccEEEEcccccEEEEEETTEETTEEEEcccEEEEEEcEEEEETTTTcEEEEEEEcTTccccEEEEEEETTTEEcccEEEcTTTccTHHHHHHHHHHHHHTcccccEEEEETTEEEEEEEccccccEEEEccccTTccccccccHHHHHHHHHccEEEEEccTTccTTHHHHHHTTcGGGTHHHHHHHHHHHHHHHHTTcccGGGEEEEEETHHHHHHHHHHHHcGGGccEEEEEcccccTTTGGGcTTGGGGHHHHccTTcHHHHHHHHHHcGGGcccccccTccccEEEEEEETTcccccTHHHHHHHHHHHHHTTccccEEEEEEccccccTTccHHHHHHHHHHHHHHHHHHHTccc
DISOP:02AL 1-6|
PSIPRED ccccccccccccccccEEEEEcccEEEccHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccEEEccEEEEEEEccccccEEEEEEEcccccccEEccccccccccccccccEEEEEHHHccccccEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEccccEEccccccccccEEEEEEcccEEEEEEccccccccEEEEEEccccccccEEEEEEccccEEEEEEEEccccEEEEEEEccccccEEEEEEEcccccEEEEEccccccEEEEEEEEccccEEEEEEEccccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEEEccEEEEEEEEcccEEEEEEEccccccccEEEEEcccccEEEEEcccccccccEEEEEEEccccccEEEEEEccccEEEEEEEccccccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEccccccccccccHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHEEEEEEcHHHHHHHHHHHccccEEEEEEEEcccccHHHHHcccccccccHHHHHcccccccHHHHHHHHHcccHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccc
//
[GTOP]
