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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55410.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  304/915 : Eukaryota  159/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:454 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   48->304 3dljA PDBj 8e-25 33.6 %
:RPS:PDB   9->452 3dljA PDBj 3e-35 21.6 %
:RPS:SCOP  21->248 1q7l.1  c.56.5.4 * 2e-27 20.8 %
:HMM:SCOP  7->452 1lfwA1 c.56.5.4 * 7.4e-49 31.3 %
:HMM:PFM   91->442 PF01546 * Peptidase_M20 6.3e-24 29.7 158/171  
:BLT:SWISS 26->304 CPGL_SCHPO 2e-31 35.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55410.1 GT:GENE BAD55410.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 581486..582850 GB:FROM 581486 GB:TO 582850 GB:DIRECTION + GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD55410.1 LENGTH 454 SQ:AASEQ MTSEEPHVAALRARVAGLMGQAKQDLTQLVSFKSVADARQFPPQECEDAAQWVADACASVGLTDVGLHETPDGTKAVIAARPAPPGAPTVLLYCHYDVQPPLDEAAWRTPVWTLTEREDGRWYGRGAADCKGNIVMHLTALRALGPDLPVGVTLVSEGSEEQGTGGLEKFVVANPELLRADAIVIGDCGNFAPGVPTLTETLRGNVNVVVTVETLAGPMHSGMFGGAAPDAMTALVHLLATLHDADGNTTVAGLAADQGWDGVQYPPEQFRLDAGVLDGVDLAGSGTVSQMLWARPALTILGIDAPPVVGSAAAVQAVARARLNLRIPPGVEPEDAHRALVAHLHAHIPLHARLTVELEGLGAPFRSSTGGPARAAMEAALTAAYGRPTTTQGQGGSIPLCNVFAETYPAAEIMLLGVEEPSCLIHAPNESVDPAEIERMALAEALFLRDYAAR GT:EXON 1|1-454:0| BL:SWS:NREP 1 BL:SWS:REP 26->304|CPGL_SCHPO|2e-31|35.4|277/474| SEG 305->322|appvvgsaaavqavarar| SEG 336->347|ahralvahlhah| SEG 373->384|araameaaltaa| BL:PDB:NREP 1 BL:PDB:REP 48->304|3dljA|8e-25|33.6|253/471| RP:PDB:NREP 1 RP:PDB:REP 9->452|3dljA|3e-35|21.6|440/471| HM:PFM:NREP 1 HM:PFM:REP 91->442|PF01546|6.3e-24|29.7|158/171|Peptidase_M20| RP:SCP:NREP 1 RP:SCP:REP 21->248|1q7l.1|2e-27|20.8|221/280|c.56.5.4| HM:SCP:REP 7->452|1lfwA1|7.4e-49|31.3|262/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 741 OP:NHOMOORG 476 OP:PATTERN ------1211111112---------------------------1-----------------1-----1 11313111111111-1111-1111111111111111121111--121111111211111121112-222211111111----1-----1111-1111--11111211111-------11111111-----------24433---21-------------------------------------31222---1-----------------21----------11--------21----------------------1-21---------21---111---111111111111111111111-------------11111-1111----------------------------2-----------1---------1-1----11111112321111112111111111111-1121121212--422311122211211--1411111221--------2111---------------------------------------111-22222221111-22322222-1211------11-1-111212-22------------------------1----------1--------1-111121-1--------------------------------------------------------------1---------32--------------------------------111-22--------------------------------------------111111-------12--------------------------------1---1111-1-1------------------------1---------------1------------------------------------------------------11 -----22-932-1111221122312132211-1-112333333222332111212222211122222212212212212221112211-14222232222212342-1--2272213-12221233-313Q2-243-12-22123-22--21-423233112-1111111-221-112------1---12--11----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 451 STR:RPRED 99.3 SQ:SECSTR ##ccccccHHHHHHHHHTHHHHHHHHHHHHTccccccccHHHHHHHHHHHHHHHHHHHHTTcEEEEcccEEEcccEEEEEEcccTTccEEEEEEEcccccccGGGTccccTTccEEEETTEEEcTTTTTTHHHHHHHHHHHHHHTcccccEEEEEEEccGGGTTTTHHHHHHHHTTTTcTTccEEEEcccccccccEEEEEEcEEEEEEEEEEcccccEETTTcTTccccHHHHHHHHHTTcccTTcccccTTTTTTcccccHHHcHHHHHHHHTccccccccHHHHHHHHHTccEEEEEEEEccccccccccEEccEEEEEEEEEEcTTcHHHHHHHHHHHHHHHTTccccEEEEEEEEEEccEEccTTcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHTcccTEEEcccccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHHH# DISOP:02AL 1-6| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccccccEEEEEcccccccccccccccccccEEEEEcccEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcccccccccccEEEEEEccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHcccccHHHHHHccccccccccccccHHHHHHHcccccEEEEEEccccccccEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHccccEEEEccccccccccccccEEcHHHHHHHHHHHHHHHHHHHcc //