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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55428.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  127/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.44.2d.250.1
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   91->315 1vlyA PDBj 6e-07 28.2 %
:RPS:SCOP  9->276 1v5vA2  d.250.1.1 * 7e-36 17.7 %
:RPS:SCOP  280->339 1pj5A1  b.44.2.1 * 2e-05 22.0 %
:HMM:SCOP  28->277 1nrkA2 d.250.1.1 * 3.2e-61 31.3 %
:RPS:PFM   48->243 PF01571 * GCV_T 5e-12 28.1 %
:HMM:PFM   48->245 PF01571 * GCV_T 6.7e-44 29.2 195/211  
:HMM:PFM   261->331 PF08669 * GCV_T_C 1e-11 33.3 69/95  
:BLT:SWISS 31->243 GCST_HALHL 7e-14 27.7 %
:BLT:SWISS 256->319 YGFZ_COLP3 2e-05 42.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55428.1 GT:GENE BAD55428.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(603000..604115) GB:FROM 603000 GB:TO 604115 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55428.1 LENGTH 371 SQ:AASEQ MSVLDAPSPLLSVAGAVAGPPGSPDATVAWHYGNPFGEQRAAVERVAIVDRSHRFVLRITGGERLSWLHTISSQHVANLGDRRSAENLDLDLNGRIQHHFVLSDLDGTVWIDTEADRGPALLDFLTKMVFWADAKPAEATDHAVLSLLGPEVARLHEALGVTELPEIYAVTPLPDGGFLRRMPWPTADSYDLVVPRERLGAWWTTLTEAGAEPAGMWAFEALRVAALRPRIGLDTDERTIPHEVRWIGGPAEHGAVHLDKGCYRGQETVARVHNLGKPPRQLVLLHLDGSADERPQPGADVTAGGRTVGRLGSVVDHYELGPIALALVKRAVPADAQLTTGPSAAAIDPDSVPVDDTPQAGRLAVDRLRGR GT:EXON 1|1-371:0| BL:SWS:NREP 2 BL:SWS:REP 31->243|GCST_HALHL|7e-14|27.7|213/360| BL:SWS:REP 256->319|YGFZ_COLP3|2e-05|42.6|61/324| BL:PDB:NREP 1 BL:PDB:REP 91->315|1vlyA|6e-07|28.2|213/314| RP:PFM:NREP 1 RP:PFM:REP 48->243|PF01571|5e-12|28.1|196/211|GCV_T| HM:PFM:NREP 2 HM:PFM:REP 48->245|PF01571|6.7e-44|29.2|195/211|GCV_T| HM:PFM:REP 261->331|PF08669|1e-11|33.3|69/95|GCV_T_C| GO:PFM:NREP 3 GO:PFM GO:0004047|"GO:aminomethyltransferase activity"|PF01571|IPR006222| GO:PFM GO:0005737|"GO:cytoplasm"|PF01571|IPR006222| GO:PFM GO:0006546|"GO:glycine catabolic process"|PF01571|IPR006222| RP:SCP:NREP 2 RP:SCP:REP 9->276|1v5vA2|7e-36|17.7|265/310|d.250.1.1| RP:SCP:REP 280->339|1pj5A1|2e-05|22.0|59/88|b.44.2.1| HM:SCP:REP 28->277|1nrkA2|3.2e-61|31.3|243/243|d.250.1.1|1/1|Folate-binding domain| OP:NHOMO 139 OP:NHOMOORG 136 OP:PATTERN ------------------------1--11--1------------------------------------ 111-111111111111111-111111111111111111111111111111111111111111111111121-----------------------------------------------------------------1--11----1211-111--------1-1---1111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------111--1-1--11------------------1-1----------------1---------------------------------------------------------------------------------------------1----------------------11-1-1-------11---1--------------------------1-1----------------------------11-------1-------------------------2-11--------------------------------------------------------------------------------------------1---------1------------------------------1-----------1------11111111---------------11--------------1-------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------11----1---1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 306 STR:RPRED 82.5 SQ:SECSTR ##############################EcccHHHHHHHHHHccEEEEcTTcEEEEEEcTTHHHHHHHHcccccTTccTTEEEEEEEEcTTccEEEEEEEEETTEEEEEEEHHHHHHHHHHGHHTTccccccEEEEEcccEEEEEEcTTHHHHHHHTTccccccTTccEEEEETTEEEEEEEEcccccEEEEEEcHHHHHHHHHHcTTcEEEcHHHHHHHHHHHTcccccGGGTTcccGGGGTGGccHGGTTcccccccccTTHHHHHHTTcTTcccEEEEE##EEEcccccccTTccEEEETTEEEEEcEEEEETTTTEEEEEEEETTccTTcEE################################# DISOP:02AL 1-4| PSIPRED ccccccccccccccccEEccccccccccccccccHHHHHHHHHHccEEEEccccEEEEEEcHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEEccccEEEEEccccHHHHHHHHHHHHccccEEEEEccccEEEEEEcHHHHHHHHHHccccccccccEEEccccEEEEEccccccccEEEEEcHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEccccccccccccEEEcccEEEEEEEEcccccccccEEEEEEHHHcccccEEEEccEEEEEEccccccccHHHHHHHHHHHHccc //