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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55432.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  888/915 : Eukaryota  196/199 : Viruses  1/175   --->[See Alignment]
b.40.4c.37.1f.37.1
:611 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   407->592 1mv5D PDBj 4e-18 28.6 %
:RPS:PDB   200->309 2bnlB PDBj 3e-06 5.0 %
:RPS:PDB   389->608 3b5jA PDBj 7e-28 26.5 %
:RPS:SCOP  202->310 1pf4A2  f.37.1.1 * 3e-06 9.9 %
:RPS:SCOP  386->438 2vnuD1  b.40.4.5 * 6e-05 9.4 %
:RPS:SCOP  412->595 1e69A  c.37.1.12 * 2e-25 17.5 %
:HMM:SCOP  3->348 1pf4A2 f.37.1.1 * 1e-41 22.9 %
:HMM:SCOP  369->612 1pf4A1 c.37.1.12 * 9.3e-51 36.8 %
:RPS:PFM   429->552 PF00005 * ABC_tran 9e-09 42.5 %
:HMM:PFM   429->552 PF00005 * ABC_tran 7.1e-18 36.6 112/118  
:HMM:PFM   417->436 PF02463 * SMC_N 5.4e-05 65.0 20/220  
:HMM:PFM   524->597 PF02463 * SMC_N 3.5e-06 34.2 73/220  
:HMM:PFM   28->287 PF00664 * ABC_membrane 7.3e-11 17.7 249/275  
:BLT:SWISS 163->608 CYDD_ECOLI 2e-31 33.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55432.1 GT:GENE BAD55432.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 607946..609781 GB:FROM 607946 GB:TO 609781 GB:DIRECTION + GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD55432.1 LENGTH 611 SQ:AASEQ MARPPVDPRLWRHARSARRYLGYSVGLSLVTTVCIVVAATALGRVLAGVITDPTRRRITDWTAELVVLALALAGRAVASWWQARIAHRAGASVVAELETAVLAAGAALPPRELDRRRTELAVVVGTGLSGLRAYLTGYLPALLLAVLVPPVVLAVILAHDPVSAGIAVVTLPLIPIFMVLIGLLTQGRAAATLAATTRLSDQLLDLFAGMPTLRALGREHADGGPAARTMEHRVRALGDALRVRTMRALRIAFLSSMVLELLATLSVALIAVSIGLRLVYGGMDLYDGLVALILAPEVYLPLRMVGERFHAAQDGMAAADKAFAVLEPEGVRRGRIDDRTRVGATDRPAVDERGGLAVGGRGGPALDGRGDLAVDERGGPAVDGRGPALVELAGLGVRARDGWAPADLCAVIRPGALTVLAGPNGSGKSTALAAILGLVDADAGRVRVDGIDVRELDPDAWWRRLAWLPQRPVLVPGTLRENLELLGADLVDLNRACAATGFDAVLDELPHRWDTVVGVGGVGLSLGQRQRLALTRVLAADRPVLLLDEPTAHLDEASEAGVLAALRERAAAGATVLVVGHRPTVLAAADQVIEVRSAVPVGRSVESGGAS GT:EXON 1|1-611:0| BL:SWS:NREP 1 BL:SWS:REP 163->608|CYDD_ECOLI|2e-31|33.6|390/588| TM:NTM 6 TM:REGION 26->48| TM:REGION 58->80| TM:REGION 137->159| TM:REGION 164->186| TM:REGION 252->274| TM:REGION 283->305| SEG 30->41|vttvcivvaata| SEG 63->78|aelvvlalalagrava| SEG 91->108|asvvaeletavlaagaal| SEG 139->158|lpalllavlvppvvlavila| SEG 182->199|glltqgraaatlaattrl| SEG 311->324|aaqdgmaaadkafa| SEG 353->373|rgglavggrggpaldgrgdla| SEG 516->523|vvgvggvg| SEG 559->574|eagvlaalreraaaga| BL:PDB:NREP 1 BL:PDB:REP 407->592|1mv5D|4e-18|28.6|185/241| RP:PDB:NREP 2 RP:PDB:REP 200->309|2bnlB|3e-06|5.0|101/126| RP:PDB:REP 389->608|3b5jA|7e-28|26.5|215/243| RP:PFM:NREP 1 RP:PFM:REP 429->552|PF00005|9e-09|42.5|106/123|ABC_tran| HM:PFM:NREP 4 HM:PFM:REP 429->552|PF00005|7.1e-18|36.6|112/118|ABC_tran| HM:PFM:REP 417->436|PF02463|5.4e-05|65.0|20/220|SMC_N| HM:PFM:REP 524->597|PF02463|3.5e-06|34.2|73/220|SMC_N| HM:PFM:REP 28->287|PF00664|7.3e-11|17.7|249/275|ABC_membrane| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 3 RP:SCP:REP 202->310|1pf4A2|3e-06|9.9|101/276|f.37.1.1| RP:SCP:REP 386->438|2vnuD1|6e-05|9.4|53/95|b.40.4.5| RP:SCP:REP 412->595|1e69A|2e-25|17.5|183/263|c.37.1.12| HM:SCP:REP 3->348|1pf4A2|1e-41|22.9|310/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 369->612|1pf4A1|9.3e-51|36.8|239/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 14213 OP:NHOMOORG 1145 OP:PATTERN 553-15122211224281844426D78EEA995-1-1-11-117866732974276754123325--- 78H9YDGEIIID7BDDCCC-CC22JPCCCCCDCKIKRaTY4OCWFRNFKE97HGK79G22NTSHNGMZXoFAAAAAAAD5YL7413-18762-4469--54856693BA9211111122222223AA6EE89BD6ACDDIK322J4LCGKDD9C8CCC796E6DABIVVVC4B7745593864D9C56E94B4BBBDAD9CD6CDBBBDFIJJCHBEF48DIFHJGFGEEDNXC99878868899988A5547MH8HLPG7G9HLK77RQA95A9D978ABDDBBAEFEDGEECBFGCFF6776666787766GFEBBCFEF9HCCBHJJJLIIH7MDEGHH4AABM89IJWGD51bZG466862B98DD944D3EAAA956576B6dXYHEHKNNRJFFFFGFHIEIW-JJNHHOKOObC5pXXUfhXsmlZZZK8A9LGdOJNQTNEAAAAAAAAH9E8DHBK22222222333443675465334453252368A249KFCKFIKMNHIKIKIGGLMMLMKEKJGOHDJE35EECMD8B9KEKCLMADF6B5AIB5666866A89CC777C876CAAEA77934D8777A5B99C8KJ7C345332222221-11111113536588DFA894C5879A99A85BBAAA9BDDGC6C--66AB7211222JCHI9AC9BBE9EED87-B98898989ABDB77977EGHKHMDICBBBAABBAAABAAAABD77899886-HEFEGFCEEEGE--5235433689783EAH6558453665445584676654447FEEFFFIKCHGHNFH6LMO5555565453A99G9A9AAIGCFG8CD9BAAABC66663283553344--------a-B11114-222-412-1-1371-311186994688862E4 1233HGF-OG6-ILHECHDEJMJUMRHBAAC9CKKH8GEFEEE998HDGNPITNDEJDCCBCC6656524635855625553333457-KS9CFJ9A98897BHEA4EgR*LUMfTcEA9CEMEWU6j7**W1aMeCDB9O8HoP9DEC7NB6qDNFLUDV*DZID9eIO*gSXO6D8A*577DBZUVyFam9GbQbWD ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-3, 609-611| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEccccEEEcccEEEEEEccccccHHHHHHHHHccccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHccEEEEEEccccccEEEEccccc //