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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55433.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  855/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.37.1f.37.1
:560 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   362->520 1pf4A PDBj 5e-17 31.2 %
:RPS:PDB   351->389 1e9sK PDBj 5e-04 28.9 %
:RPS:PDB   361->487 2dwoA PDBj 4e-20 11.1 %
:RPS:PDB   458->520 3dfqD PDBj 2e-07 8.5 %
:RPS:SCOP  349->388 2vnuD1  b.40.4.5 * 5e-06 12.5 %
:RPS:SCOP  361->487 1sgwA  c.37.1.12 * 4e-16 21.6 %
:HMM:SCOP  17->363 1pf4A2 f.37.1.1 * 3.3e-27 20.5 %
:HMM:SCOP  354->545 1pf4A1 c.37.1.12 * 1.1e-29 33.7 %
:RPS:PFM   406->484 PF00005 * ABC_tran 2e-08 45.6 %
:HMM:PFM   396->484 PF00005 * ABC_tran 2.2e-14 41.8 79/118  
:BLT:SWISS 344->387 TAUB_CHRVO 7e-04 47.7 %
:BLT:SWISS 361->488 MDR49_DROME 2e-19 39.8 %
:PROS 457->471|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55433.1 GT:GENE BAD55433.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 609778..611460 GB:FROM 609778 GB:TO 611460 GB:DIRECTION + GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD55433.1 LENGTH 560 SQ:AASEQ MNSTVAERVRAVRTDLRRMGELLEPARGRVAVAVTWGVVALGSALGLAALAAWLIARAWQMPPVLDLSVAVVSVRALGISRGLARYLERLATHDVALRSMTNARAAVYRRLARSDVWLRRDRRSGSGAAADSAARLRRGDLLVRIGADIDDLGAVIVRALVPIAVAAVLALAAVGLIATISVPAAIILAASLAVAGVLAPWLSARAARSAEVAVRADRAEFTARALTVLDHAAELRVAGRLAGTVTAARDAGRRSVAAEDSAAARTAWSAAATPLALGASVLGALLIGVVAYGPGGGLPGGMTPMALTILVLLPLSAFEATAALPAAAQSLTTARAALHRIEGATRAAVATDGDAAPVRPDLPPGRRIAVVGPSGAGKTTLLMFWAGLFDTPRPDVTFFAEDAHLFGTSVLENLRVARGDVTEAEAERALRSVGLGDWLDALPDGLSTDLVGGAAAVSGGQRRRILLARALVSPARVLLLDEPTEHLEAGAGADLLRALLDADSGLVEPDRVVVVVTHQLPADHRADVVVRVASSWQVSIERSPRSAPDSAPRENTLPTS GT:EXON 1|1-560:0| BL:SWS:NREP 2 BL:SWS:REP 344->387|TAUB_CHRVO|7e-04|47.7|44/261| BL:SWS:REP 361->488|MDR49_DROME|2e-19|39.8|128/1302| PROS 457->471|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 5 TM:REGION 31->53| TM:REGION 154->176| TM:REGION 183->205| TM:REGION 271->293| TM:REGION 305->327| SEG 40->58|algsalglaalaawliara| SEG 118->141|lrrdrrsgsgaaadsaarlrrgdl| SEG 154->200|avivralvpiavaavlalaavgliatisvpaaiilaaslavagvlap| SEG 203->220|saraarsaevavradrae| SEG 255->301|svaaedsaaartawsaaatplalgasvlgalligvvaygpggglpgg| SEG 315->338|lsafeataalpaaaqslttaraal| SEG 489->506|agagadllralldadsgl| SEG 522->533|adhradvvvrva| BL:PDB:NREP 1 BL:PDB:REP 362->520|1pf4A|5e-17|31.2|154/520| RP:PDB:NREP 3 RP:PDB:REP 351->389|1e9sK|5e-04|28.9|38/422| RP:PDB:REP 361->487|2dwoA|4e-20|11.1|126/449| RP:PDB:REP 458->520|3dfqD|2e-07|8.5|59/361| RP:PFM:NREP 1 RP:PFM:REP 406->484|PF00005|2e-08|45.6|68/123|ABC_tran| HM:PFM:NREP 1 HM:PFM:REP 396->484|PF00005|2.2e-14|41.8|79/118|ABC_tran| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 349->388|2vnuD1|5e-06|12.5|40/95|b.40.4.5| RP:SCP:REP 361->487|1sgwA|4e-16|21.6|116/200|c.37.1.12| HM:SCP:REP 17->363|1pf4A2|3.3e-27|20.5|307/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 354->545|1pf4A1|1.1e-29|33.7|187/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 6458 OP:NHOMOORG 1085 OP:PATTERN ---1---1111-1111--11-1--233344512----------1-114--21-12111--1-11---- 8683B466AAA32257755-5611995555587787CICA399F9D97A6559BC53A11AE56D54CGO6477776555OF2112--6631-4357--42554283846-------11-11112544796454457557B322C2B59C7763466436273655BDJQA18463-16-61124521D7382588888598388967986AA878AA32478659BCACAAJ54444443444444442223F844AB4374BA933DB9742658463359666B88AB9977AB8AA13211111311115554445457B686BABAACA939697GG399AH656D886--LMC2225312222945361167753544332DFA6776B8A97787769878C-99B9A9996F81FBBAGGCFIF8BCC53563B8888A95999999997583856C1111-1111144225522342222332511423-438886688898544446675444435746555412555733657686A634728358422222225526622422224525122213533435232242861532322111111---------2513555342342537636466473665535347447--433521--11161323452445255522-42222242444552222241156A9B83232333233333323422433322-A88798688797--321211158871164822233114433-223233434332555549556655663569A93444444342444955555B94AA225566444433331143553333--------T-81--1--211-2-1---1131-1--14143235333252 2222655-523-78896994DDBH9GD997979DBC8B899AA565978DECID79D7886851232222123333311252222267-75463445555616EC715IHH5ABBDA66486A9EE1I3a*C-DBD6543E38BC35534A45Q5A8BG8Lu3I774865WHO853334J22136NHJY7NN57DABB5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-11, 559-560| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccHHHHHHHHHHccHHHHccEEEEEcccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHccEEEEEEccEEEEEcccHHHHHHcccHHHHHHcc //