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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55443.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  788/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.6
:252 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->217 2oqrA PDBj 4e-25 36.0 %
:RPS:PDB   25->134 3c2eA PDBj 5e-04 10.9 %
:RPS:PDB   122->221 2d1vA PDBj 5e-25 50.0 %
:RPS:SCOP  118->217 1ys6A1  a.4.6.1 * 7e-26 44.0 %
:HMM:SCOP  121->221 1kgsA1 a.4.6.1 * 1.1e-27 44.6 %
:RPS:PFM   144->217 PF00486 * Trans_reg_C 8e-12 50.0 %
:HMM:PFM   144->217 PF00486 * Trans_reg_C 8.9e-30 54.1 74/77  
:BLT:SWISS 3->228 GLNR_STRCO 1e-72 64.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55443.1 GT:GENE BAD55443.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 616392..617150 GB:FROM 616392 GB:TO 617150 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55443.1 LENGTH 252 SQ:AASEQ MELLLLTSDPNPESVLPSLALLAHTVRPAPTEVASLLEAGTADVALVDARTDLAAARGLCRLLGSTGSSVPVVAVLTEGGLVAVNADWGLDDILLPGTGPAELDARLRLLVGRNGGVASPENTGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPARTPAKGEAVSFPEDDSEGDDSFAPVNGSAQ GT:EXON 1|1-252:0| BL:SWS:NREP 1 BL:SWS:REP 3->228|GLNR_STRCO|1e-72|64.9|222/267| SEG 53->64|laaarglcrllg| BL:PDB:NREP 1 BL:PDB:REP 13->217|2oqrA|4e-25|36.0|203/226| RP:PDB:NREP 2 RP:PDB:REP 25->134|3c2eA|5e-04|10.9|110/267| RP:PDB:REP 122->221|2d1vA|5e-25|50.0|100/103| RP:PFM:NREP 1 RP:PFM:REP 144->217|PF00486|8e-12|50.0|74/77|Trans_reg_C| HM:PFM:NREP 1 HM:PFM:REP 144->217|PF00486|8.9e-30|54.1|74/77|Trans_reg_C| GO:PFM:NREP 4 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00486|IPR001867| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00486|IPR001867| GO:PFM GO:0003677|"GO:DNA binding"|PF00486|IPR001867| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00486|IPR001867| RP:SCP:NREP 1 RP:SCP:REP 118->217|1ys6A1|7e-26|44.0|100/106|a.4.6.1| HM:SCP:REP 121->221|1kgsA1|1.1e-27|44.6|101/0|a.4.6.1|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 5298 OP:NHOMOORG 793 OP:PATTERN -------------------------------------------------------------------- 58D6H466777554BAAAA-AG44AAAAAAAAFBBD9DCD7B9C8A68888688956811HGI5L5GLIJ9444445536BA6131434442-2-----1-512241875--------------132122212121DCCEG435C4KADABB756886657879738CAI55634545544348945512-A5AOOPOPMPMDQLQRPK988777PQV68AM6AC777778XS4666666566666665666584638745334555587444564575888554534466666666666344444444544442243322254J9FPHHHIJLKGIECHJJ8AB8HC94699F62UPD87334546574116833455442333558885365655755455555446-44844746593-966A867AA9555A35334443353223333333364434545-----------------------------12572335428CBDFDB97776CCDD8788499BE58AC-1DFE86967EA88C49F8342554111111143157946512221153221-8666366544423371612111---------------21--1118835A564653679B846688869769786--23123------75596557778787977-7887777779777777776979663345455555545555555866566772-555555555555--1522222333356B662111-1-1212---1654563444575CCBCAGDG5ACCD78AD2212122122544555555356569A656555552222--21222222----------1-------------------------3433342434373 --------------------------------------------------------------------------------------------------------------------------------------------------------------1------1---------1------------6-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 240 STR:RPRED 95.2 SQ:SECSTR ############HHHHHHHHHHEEHHHHHHTHHHHHHHHHcccEEEEccEETTEEHHHHHHHHHHHcTTcEEEEGGGcHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHGEEcGGcTccccEEETTEEEETTTTEEEETTEEccccHHHHHHHHHHHHTTTccccHHHHHHHHHcTTccccTHHHHHHHHHHHHHHcTTccccEEEETTTEEEEccccTTTTHHHHEEEEEEEEETTEEEEEccTTcc DISOP:02AL 114-125, 221-240, 250-252| PSIPRED cEEEEEEccHHHHHHHHHHHHcccEEEEEccHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccccEEEEEcccHHEEHHHHcccccEEEccccHHHHHHHHHHHHHccccccccccccEEEEccEEEEcccEEEEEccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEEHHHHHHHHHHccccccEEEEEEcccEEEEcccccHHHHcccccccccccccccccccccccc //