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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55451.1
DDBJ      :             putative dihydrouridine synthase
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  852/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:382 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->303 1vhnA PDBj 1e-34 38.0 %
:RPS:PDB   66->324 3dwjA PDBj 4e-35 10.1 %
:RPS:SCOP  22->330 1vhnA  c.1.4.1 * 1e-69 34.6 %
:HMM:SCOP  20->338 1vhnA_ c.1.4.1 * 8.8e-80 38.7 %
:RPS:PFM   24->326 PF01207 * Dus 3e-75 51.0 %
:HMM:PFM   23->326 PF01207 * Dus 1.6e-107 50.8 297/310  
:BLT:SWISS 6->382 DUS_MYCTU e-129 59.4 %
:PROS 107->125|PS01136|UPF0034
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55451.1 GT:GENE BAD55451.1 GT:PRODUCT putative dihydrouridine synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(625846..626994) GB:FROM 625846 GB:TO 626994 GB:DIRECTION - GB:PRODUCT putative dihydrouridine synthase GB:PROTEIN_ID BAD55451.1 LENGTH 382 SQ:AASEQ MTMTTEATSTLRIGPYPVDPPVVLAPMAGITNLAFRKLCREFGSATSIYVCEMITARAVVERNEKTLHMMSFDADEHPRSMQLYGVDPQTLGEAVRIIVGEGWADHIDMNLGCPVPKVTRLGGGAALPYKRALFARIVRAMVAAAEPAGVPVTVKFRIGIDDDHHTYLDTGRIAEAEGARAVSLHARTAAQRYSGQADWSAIARLKEAVTTIPVLGNGDIFAAEDAVRMMAETGCDGVVVGRGCLGRPWLFAELQAALRGQPLPEPPNLGRVGEVLYRHGALLSEHLGEDKAMRDLRKHMAWYLMGFPVGADLRRSFATVSSLAQLRDLIGRLDPTAPFPKDAEGPRGRQGSPGKVALPHGWLDDPDDPAVPTAADVMHSGG GT:EXON 1|1-382:0| BL:SWS:NREP 1 BL:SWS:REP 6->382|DUS_MYCTU|e-129|59.4|377/389| PROS 107->125|PS01136|UPF0034|PDOC00874| SEG 364->377|ddpddpavptaadv| BL:PDB:NREP 1 BL:PDB:REP 22->303|1vhnA|1e-34|38.0|263/299| RP:PDB:NREP 1 RP:PDB:REP 66->324|3dwjA|4e-35|10.1|248/408| RP:PFM:NREP 1 RP:PFM:REP 24->326|PF01207|3e-75|51.0|294/303|Dus| HM:PFM:NREP 1 HM:PFM:REP 23->326|PF01207|1.6e-107|50.8|297/310|Dus| GO:PFM:NREP 4 GO:PFM GO:0008033|"GO:tRNA processing"|PF01207|IPR001269| GO:PFM GO:0017150|"GO:tRNA dihydrouridine synthase activity"|PF01207|IPR001269| GO:PFM GO:0050660|"GO:FAD binding"|PF01207|IPR001269| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01207|IPR001269| RP:SCP:NREP 1 RP:SCP:REP 22->330|1vhnA|1e-69|34.6|295/305|c.1.4.1| HM:SCP:REP 20->338|1vhnA_|8.8e-80|38.7|305/305|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 2170 OP:NHOMOORG 1050 OP:PATTERN -------------------------------------------------1111--------------1 111-111111111111111-11111111111111111111----11111111111111--1111111111-11111111111-1----222212111--111111211111111111111111121111111111111111---1-221122211222222222211222122122222221222211--1112222222222222222111122222-1131221111111211111111111111111111211111111113311111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111-121-2222211111222222222222222222222222-11211211222122222222222222222222222222211111111111111121111111111111111111-1111111111111112222222222222222223222222222333322233332333333322222111133333333311112232222222112222122222122211112111111111111111111111111111111333333323333333333333333333333--21212------33333333333333333-3333333333333333333333333333333333333333333322333331-333333333333--121111122222323333333332332333333333333333333333333333333333222222222233333233233333222222222211111-1133222211111212211----1---1--------1-------1111111111-22 2222555-62324444422233222322222222122222222333232222221231233233333323333333323333333343-3544444333321456423C47263444-11-232521316J3-436112131322132-151142463347735331443244342568o7774374752548455554 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 343 STR:RPRED 89.8 SQ:SECSTR GHHHHHHHHHHHTcccccccEEEEEEETTEEEEEEcccccccccccccHHHHTHHHHHTTcEEcccGGGGccccccccGGGccccccccccHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHTcTTcTTGGGTTccEEEEcTTcccHHHHHHHHHHHHHHHHGGGcEEEcccccccccccEEccccccccccEEcccTTcccEEcGGGHHHHHHHHHTTccccccccccccEEEEcTTcccEEEcccTTTccEEEccccccGGGGcccccGGccEEEcccccEEcccEEEETTEEEcccTHEEETTEEccccEEccc####################################### DISOP:02AL 1-6, 376-382| PSIPRED ccccccccccEEEccEEEcccEEEEccccccHHHHHHHHHHHccccEEEEccccccHHHHcccHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHcccccEEEccccccHHHHHcccccEEEcccHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccc //