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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55453.1
DDBJ      :             putative fatty acid desaturase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  47/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
a.25.1
:321 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->267 1za0A PDBj 5e-36 37.7 %
:RPS:PDB   30->256 3chhB PDBj 4e-16 12.3 %
:RPS:SCOP  16->273 1za0A1  a.25.1.2 * 3e-22 31.9 %
:HMM:SCOP  1->311 1afrA_ a.25.1.2 * 7e-87 35.6 %
:RPS:PFM   16->314 PF03405 * FA_desaturase_2 5e-53 37.6 %
:HMM:PFM   6->313 PF03405 * FA_desaturase_2 5.8e-84 27.3 300/330  
:BLT:SWISS 18->293 STAD_SIMCH 7e-22 27.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55453.1 GT:GENE BAD55453.1 GT:PRODUCT putative fatty acid desaturase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(627831..628796) GB:FROM 627831 GB:TO 628796 GB:DIRECTION - GB:PRODUCT putative fatty acid desaturase GB:PROTEIN_ID BAD55453.1 LENGTH 321 SQ:AASEQ MARDLTQLELLTELEPVAEENVNRHLSLAKEWHPHDYVPWDEGRNFAALGGVDWDPEQSKLSEVAKAAMITNLLTEDNLPSYHREIAENFSQDGAWGTWVGRWTAEENRHGIVMRDYLVVTRGVDPVALEQARMIHMTNGFASPAEADAGFLHSVAYVTFQELATRVSHRNTGKVCDDPIADRMLQRVAADENLHMIFYRNMCGAALDLVPDQAIEAITLILEHFQMPGAGMPNFRRNGVLMAKHGIYDLRQHLEEVVQPVLKKWNVFDRTDFTARGEQTRERLAAFLDKLSKDVVKFEEQRDRMLAREAKKREMADAAAS GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 18->293|STAD_SIMCH|7e-22|27.5|269/398| SEG 5->15|ltqlelltele| BL:PDB:NREP 1 BL:PDB:REP 16->267|1za0A|5e-36|37.7|223/242| RP:PDB:NREP 1 RP:PDB:REP 30->256|3chhB|4e-16|12.3|227/299| RP:PFM:NREP 1 RP:PFM:REP 16->314|PF03405|5e-53|37.6|290/305|FA_desaturase_2| HM:PFM:NREP 1 HM:PFM:REP 6->313|PF03405|5.8e-84|27.3|300/330|FA_desaturase_2| GO:PFM:NREP 3 GO:PFM GO:0006631|"GO:fatty acid metabolic process"|PF03405|IPR005067| GO:PFM GO:0045300|"GO:acyl-[acyl-carrier-protein] desaturase activity"|PF03405|IPR005067| GO:PFM GO:0055114|"GO:oxidation reduction"|PF03405|IPR005067| RP:SCP:NREP 1 RP:SCP:REP 16->273|1za0A1|3e-22|31.9|229/242|a.25.1.2| HM:SCP:REP 1->311|1afrA_|7e-87|35.6|303/0|a.25.1.2|1/1|Ferritin-like| OP:NHOMO 161 OP:NHOMOORG 63 OP:PATTERN -------------------------------------------------------------------- ----1---------63422-22223222222333332132-222----------------11-----111-----------------------------1-121---1-1-------------------------------------------------------------------------11----------------1-----1---------1-----1-----------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------121H111217796-871------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 90.3 SQ:SECSTR ###############HHHHHHHGTTccTTcccccGGGcTTTTcHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTccTTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHTTcTTHHHHHHHccccccHHHHHHHHHHHHHHHTHTTcTTcccccHHHHHHHHHHHHHHHHHTc#####cTTHHHHccccc########### DISOP:02AL 1-3, 299-321| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc //