[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55466.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  210/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:291 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->205 2japC PDBj 4e-08 39.4 %
:RPS:PDB   13->91 2ag5C PDBj 1e-05 23.4 %
:RPS:PDB   68->205 3ce6B PDBj 5e-13 8.1 %
:RPS:SCOP  6->283 1w6uA  c.2.1.2 * 3e-17 12.6 %
:HMM:SCOP  12->239 1n5dA_ c.2.1.2 * 4.4e-49 37.9 %
:RPS:PFM   46->143 PF00106 * adh_short 3e-05 38.8 %
:HMM:PFM   16->144 PF00106 * adh_short 1.2e-21 31.8 129/167  
:BLT:SWISS 7->286 RDH13_MOUSE 2e-38 40.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55466.1 GT:GENE BAD55466.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 643418..644293 GB:FROM 643418 GB:TO 644293 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55466.1 LENGTH 291 SQ:AASEQ MSRWDTANIPDQSGRTFIVTGANSGLGAVAARALARAGADVVLACRNLTKAEKVAAEIGARATVRELDLADLASVRAFAAGTERVDVLINNAGVMAVPHRTTADGFEMQIGTNHLGHFALTGLLLDKITDRVVTVSSGAHAVGRIDLADLNWERRRYQRWLAYGQSKLANLLFAYELQRRLGAAGSPILSVAAHPGYAATELQSHTETFLDSVMNVGNRILAQTAEMGALPELFAATMPVEPGAFYGPTGLGGMRGYPGRCGSTKASRDERVAGELWALSERLTGVTYSFD GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 7->286|RDH13_MOUSE|2e-38|40.5|269/334| SEG 25->44|glgavaaralaragadvvla| BL:PDB:NREP 1 BL:PDB:REP 14->205|2japC|4e-08|39.4|180/246| RP:PDB:NREP 2 RP:PDB:REP 13->91|2ag5C|1e-05|23.4|77/244| RP:PDB:REP 68->205|3ce6B|5e-13|8.1|136/485| RP:PFM:NREP 1 RP:PFM:REP 46->143|PF00106|3e-05|38.8|98/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 16->144|PF00106|1.2e-21|31.8|129/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->283|1w6uA|3e-17|12.6|262/288|c.2.1.2| HM:SCP:REP 12->239|1n5dA_|4.4e-49|37.9|214/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1923 OP:NHOMOORG 408 OP:PATTERN ------------------------21121121--------------1--------------------- 1-2-4-11------79644-45114544444484544353-1-851-1-33-111--2--221-9-3593------------1-----1111---------3---5-521--------------------1----211112---2-511----11--1121122--11231111111111111112-----1------------------1-----------11--------3------------------------11---------11------111-----------------------------------------------11----------------------------------------1----3-1211------31111---11113------------22122122-1--111-11-431----1412---------11111111-331----------------------------------21-1------13323-11-----1-1111-1214--------1---------1-------------------------1-----------------------1211--------------------------------1----1------------------------------------1----------------------------------------------------------------------------------------------2-1----------------111111------1212--1-1---------------------1--------------1-------------11----------------------------------------1--1--------- --11643-31--33287D877B8EEA944444455-2222222122B4HRHKZSAE9534136231111321415111-115554511-6L575741113252531-7DJlLWHGL66643456C7284Ge9-85853249589657442556B87598DK88HDG6D8DK767G3385*77679C87H7FG53G89B2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 286 STR:RPRED 98.3 SQ:SECSTR HcccccGGGGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEEcccccccccHHHcTTcEEEEccccGGGHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHcGGGccccEEEccHHHHHHHHHHHGGHHHHTcccccccHHHHHHccHHHHHHHHHHHHHHTTccEEEEcTTHHHHHTTTccEEEEEEEEEEEETTEEEEEEEEEEcccHHHHHHHHHHHHHHHHH##### DISOP:02AL 1-2| PSIPRED cccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHccccccc //