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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55472.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  127/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.71.1
:184 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   11->155 3jtwA PDBj 3e-09 26.8 %
:RPS:PDB   1->179 1ai9A PDBj 2e-25 11.2 %
:RPS:SCOP  1->179 1ai9A  c.71.1.1 * 1e-23 11.2 %
:HMM:SCOP  1->183 1juvA_ c.71.1.1 * 5.1e-32 28.8 %
:RPS:PFM   9->171 PF01872 * RibD_C 2e-09 41.9 %
:HMM:PFM   8->172 PF01872 * RibD_C 9.8e-18 29.6 152/200  
:BLT:SWISS 4->178 YWJB_BACSU 2e-18 32.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55472.1 GT:GENE BAD55472.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 648562..649116 GB:FROM 648562 GB:TO 649116 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55472.1 LENGTH 184 SQ:AASEQ MTTTQFYTATTLDGFLADSDNSLSWLFAVPGAGDAEAETETFFAGVGAMCMGATTYEWILANDAPENWVKSYGDTPCWVFTHRELPRVPGANLHFVAEDVRPVHERMREAAGGANIWVVGGGDLAGQFADAGLLDELILAYAPVTLGAGAPLLPRRILADRLTLTKSTTVGQFAMLTYRLAAPA GT:EXON 1|1-184:0| BL:SWS:NREP 1 BL:SWS:REP 4->178|YWJB_BACSU|2e-18|32.9|167/174| BL:PDB:NREP 1 BL:PDB:REP 11->155|3jtwA|3e-09|26.8|138/173| RP:PDB:NREP 1 RP:PDB:REP 1->179|1ai9A|2e-25|11.2|169/192| RP:PFM:NREP 1 RP:PFM:REP 9->171|PF01872|2e-09|41.9|148/198|RibD_C| HM:PFM:NREP 1 HM:PFM:REP 8->172|PF01872|9.8e-18|29.6|152/200|RibD_C| GO:PFM:NREP 2 GO:PFM GO:0008703|"GO:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"|PF01872|IPR002734| GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF01872|IPR002734| RP:SCP:NREP 1 RP:SCP:REP 1->179|1ai9A|1e-23|11.2|169/192|c.71.1.1| HM:SCP:REP 1->183|1juvA_|5.1e-32|28.8|163/0|c.71.1.1|1/1|Dihydrofolate reductase-like| OP:NHOMO 144 OP:NHOMOORG 133 OP:PATTERN --------------------------------------------1----11----------------- -11----1111----------1--11-----112221----------1----221--1---11-1---11-----------------------------1-----1---------------------------------1------2---11---11-------1----1-----------------------111111111-111111----11111---1111111111--------------------1-1-1--------11----1-----1-1---1---1--------------------------1--------1--11-111-212-1---------1---------1----------------1-------------------------------------------------22-------------------------------------1----------------------------------1----------------------------------1--11----111--11---------------------1-1---1----------1-1--1---111--------------------------------1-----------------1------1---1------1-------------------------------------------------1------------------------------------------------------1-1-------------------------------1---1-------------------11-------1111-----------------------------------------------------------------------2- ------------------------------------------------------1-------------------------------------------------------1--------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 99.5 SQ:SECSTR cccEEEEEEEETTTTEEEcTTccccccHHHHHHHHHHHccccTTcEEEEEEEHHHHHHccGGGccEEHccccTTcEEEEEcTTcccEEEETTEEEEcccHccHHHHHTTcccEEEEEEcccHHHHHHHTTcTTEEEEEEEEEEccccccccccEEcccGGGEEEccHHHHHHHHTTcccEccc# PSIPRED ccEEEEEEEEEcccEEEcccccccccccccccHHHHHHHHHHHHHccEEEEccccccccccccccHHHccccccccEEEEccccccccccccEEEEcccHHHHHHHHHHcccccEEEEEccHHHHHHHHHcccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccEEEEEEEEcccc //