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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55474.1
DDBJ      :             putative DNA helicase
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  96/915 : Eukaryota  188/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:552 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   165->516 2fwrC PDBj 9e-39 33.0 %
:RPS:PDB   177->327 3b6eA PDBj 1e-04 19.2 %
:RPS:PDB   438->529 1c4oA PDBj 2e-09 24.2 %
:RPS:SCOP  155->354 2fwrA2  c.37.1.19 * 5e-26 32.8 %
:RPS:SCOP  378->518 2fwrA1  c.37.1.19 * 2e-15 30.0 %
:HMM:SCOP  129->396 1z3iX2 c.37.1.19 * 3e-37 21.8 %
:HMM:SCOP  291->519 2fwrA1 c.37.1.19 * 8.2e-28 27.2 %
:RPS:PFM   436->497 PF00271 * Helicase_C 2e-06 34.4 %
:HMM:PFM   183->328 PF04851 * ResIII 1.3e-14 26.0 146/184  
:HMM:PFM   435->501 PF00271 * Helicase_C 4.6e-14 31.8 66/78  
:BLT:SWISS 7->540 RAD25_YEAST 5e-65 32.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55474.1 GT:GENE BAD55474.1 GT:PRODUCT putative DNA helicase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 650194..651852 GB:FROM 650194 GB:TO 651852 GB:DIRECTION + GB:PRODUCT putative DNA helicase GB:PROTEIN_ID BAD55474.1 LENGTH 552 SQ:AASEQ MTDGPLIVQSDKTLLLEVDHESADMARQAIAPFAELERAPEHVHTYRITPLALWNARAAGHDAEQVVDALVSYSRYAVPQPLLVDIVDTMARYGRLQLVKHPAHGLTLVSLDRAVLEEVLRHKKIAPMLGARIDDDTVAVHPSERGRIKQMLLKIGWPAEDLAGYVDGEAHPIELDYEGGHWKLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWRRELLARTSLTEDEIGEYSGERKEIRPVTIATYQVITRRTKGEYKHLELFDSRDWGLVIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECIEVRVTLTDAERMAYATAEPEERYKLCSTARTKIPVVESILAKHPDAPTLVIGAYLEQIEELGAALDAPVIQGSTKNKEREALFDAFRRGEIPVLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAEQGYAYRITDADDLLGPAIG GT:EXON 1|1-552:0| BL:SWS:NREP 1 BL:SWS:REP 7->540|RAD25_YEAST|5e-65|32.8|528/843| SEG 208->226|gagktmvgaaamakakatt| BL:PDB:NREP 1 BL:PDB:REP 165->516|2fwrC|9e-39|33.0|339/414| RP:PDB:NREP 2 RP:PDB:REP 177->327|3b6eA|1e-04|19.2|151/182| RP:PDB:REP 438->529|1c4oA|2e-09|24.2|91/504| RP:PFM:NREP 1 RP:PFM:REP 436->497|PF00271|2e-06|34.4|61/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 183->328|PF04851|1.3e-14|26.0|146/184|ResIII| HM:PFM:REP 435->501|PF00271|4.6e-14|31.8|66/78|Helicase_C| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 155->354|2fwrA2|5e-26|32.8|189/234|c.37.1.19| RP:SCP:REP 378->518|2fwrA1|2e-15|30.0|140/200|c.37.1.19| HM:SCP:REP 129->396|1z3iX2|3e-37|21.8|257/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 291->519|2fwrA1|8.2e-28|27.2|195/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 435 OP:NHOMOORG 327 OP:PATTERN 111-1122222222222122222123323143------------------111-121-1--1112--- ----111111121211111-11111111111111111111-11111111111111--3--11111111-1------------1-------------------------------------------------------------1-1111111----------1--11211------------1-----------------------------------------------11--------------------------------------------------------------------------------------------------------------------------------1---1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------11--------------------------------1--------------------------------1--------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------1--------------------11111111--------11--------------------------------------- 1111112152213321122111111111111111111111-111111222223311111111211111-1111111111111111112-221111111111112221222225111--11111-1112-181-121111111111-111111111221111-11112212511211-1171111121212231111111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- STR:NPRED 462 STR:RPRED 83.7 SQ:SECSTR #################################################################################EEETTTTEEEEEETTTEEEcccTTcEEEcTTccEEEEEEccccccEEEEEETTTccccEEEEGGGcccccccccHH#HHTTccccccHHHTTHHHcccccccccHHHHHHHHHHHTTccEEEEcccHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHccccccHHHHHHHHHcccccccccTTTHHHHHHHHHHHHHHHHccTTTccccTTTcccccccTTccccccccccccHcccccEEcccTTTTTGGGcccEEEEccccHHHHHcTTTccccHTHHHHTccccccccccccTTccEEEEccEEEEccHTTTHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccEEEEcTTccHHHHHHHHHHHHTTcccEEEEcccccTTcccTTEEEEEETTcGGGcHHHHHHHHGGGTTcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHTTHHHH######## DISOP:02AL 124-131, 550-552| PSIPRED cccccEEEccccEEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEEccccEEEEEccHHHHHHHHcccccHHHHcccccccccccccHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEcHHHHccccHHHHHHHHHcccccccEEEEEHHHHcccHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHccEEEEccHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccEEEcccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcHHcccccccc //