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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55477.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  234/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
b.98.1d.92.1
:493 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   74->478 1z1wA PDBj 9e-19 25.0 %
:RPS:PDB   58->482 2dqmA PDBj 1e-46 15.9 %
:RPS:SCOP  58->249 1gw6A2  b.98.1.1 * 6e-17 18.8 %
:RPS:SCOP  283->479 1gw6A3  d.92.1.13 * 5e-25 23.5 %
:HMM:SCOP  58->251 1hs6A2 b.98.1.1 * 7.4e-31 28.1 %
:HMM:SCOP  268->478 1hs6A3 d.92.1.13 * 2.1e-37 27.6 %
:RPS:PFM   77->374 PF01433 * Peptidase_M1 3e-22 30.2 %
:HMM:PFM   75->300 PF01433 * Peptidase_M1 4.3e-18 25.9 224/391  
:HMM:PFM   331->368 PF01433 * Peptidase_M1 7.6e-15 48.6 37/391  
:BLT:SWISS 74->478 TRF3_THEVO 8e-20 25.0 %
:PROS 331->340|PS00142|ZINC_PROTEASE
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55477.1 GT:GENE BAD55477.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 653218..654699 GB:FROM 653218 GB:TO 654699 GB:DIRECTION + GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD55477.1 LENGTH 493 SQ:AASEQ MNPLPCWSSRCDRTGAGHGRKGWWRVRWAVLAGVATLGLVLTGTGAAPAGADPFVGAPGLDDPYYPLDGNGGYDVRHYDVRIGYDPPSRWLDGTARIDAVATQLLRAFNLDYSGPPVDAVTVNNQPAAFERHGEHELTVTPLLPLLPGLPFTVTVHYAGPAADTAGAGWTLTPSGGAFAAGQPHSASTWYPLNDTPRDKATFALHATVPAEWEVVSNGVRTENTVRDGSRTVGWASAHPVIGYLTTIAIDRFSFLEQARANGTPILSAFAPAAERNRATEQRLPEILDFTEELFGPYPFDAAGGIYVDADLSFSLETQTRPVYAPWTDLATVVHEIAHQWWGDSVSVRSWSDICLNECFASYTADYLWPERMDGVDVDARYRETVAEFHDNPRFWEIPLENPGAGREFTSVYYRGPLFLHALRRQLGDEVFFPALREFLATHAYGNASMPELRTFLQSKSATDLTGFFTAWLNDTAPPPAEYLYPGTLGTPDR GT:EXON 1|1-493:0| BL:SWS:NREP 1 BL:SWS:REP 74->478|TRF3_THEVO|8e-20|25.0|392/779| PROS 331->340|PS00142|ZINC_PROTEASE|PDOC00129| TM:NTM 1 TM:REGION 27->49| SEG 29->51|avlagvatlglvltgtgaapaga| SEG 137->155|ltvtpllpllpglpftvtv| BL:PDB:NREP 1 BL:PDB:REP 74->478|1z1wA|9e-19|25.0|392/780| RP:PDB:NREP 1 RP:PDB:REP 58->482|2dqmA|1e-46|15.9|414/867| RP:PFM:NREP 1 RP:PFM:REP 77->374|PF01433|3e-22|30.2|291/379|Peptidase_M1| HM:PFM:NREP 2 HM:PFM:REP 75->300|PF01433|4.3e-18|25.9|224/391|Peptidase_M1| HM:PFM:REP 331->368|PF01433|7.6e-15|48.6|37/391|Peptidase_M1| GO:PFM:NREP 2 GO:PFM GO:0008237|"GO:metallopeptidase activity"|PF01433|IPR014782| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01433|IPR014782| RP:SCP:NREP 2 RP:SCP:REP 58->249|1gw6A2|6e-17|18.8|192/208|b.98.1.1| RP:SCP:REP 283->479|1gw6A3|5e-25|23.5|196/252|d.92.1.13| HM:SCP:REP 58->251|1hs6A2|7.4e-31|28.1|192/208|b.98.1.1|1/1|Leukotriene A4 hydrolase N-terminal domain| HM:SCP:REP 268->478|1hs6A3|2.1e-37|27.6|210/252|d.92.1.13|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 954 OP:NHOMOORG 425 OP:PATTERN ------11222222221211111--------------------------------------222--11 221143222222113--11-12--1211111122223233-1-1-1142221343234113342332A5611111111-------1--11-1-1--1--31431252323------------------1-1-----11111---1-111-111--11------11121111-------------11---------------------------------------------------------------------1111111-11111111-1111------1-----------------------------------------11--------------------1--------------1---111-----1--322-------------------------------------------------------------------------------111-----------------------------------1--1-----1111111----111------111-------111---------1-----------------11-1--1--------1-----1-1-111--121134-1------------------------------1-11122-2333312233321323222---1-1---------------------------------------------------------------------------------------------2-----------------------------111111-----------------------------------------------11333333331111--1---11--------------------------------------------------- ----441-121-322322122222122111111222121222211-22212132222222221311122222222221321111211----12-1-11111--232331-747355D332125174262Aj7165822316-166431127-1B184454B7533A2F2676A78---1------133-213-11-121 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 433 STR:RPRED 87.8 SQ:SECSTR #########################################################cccEEGGGcccccTTEEEEEEEEEEEcccccEEEEEEEEEEEcccTTcccEEEEccccEEEEEEETTEEcccEEEETTEEEEcccccEEEEEEEEEEEEEcGGGcTTccEEEEEETETEEEEEcTTTTGGGTccccccTTcccEEEEEEEEETTTccEEEEEEEEEEccTTEEEEEEEccccccGGGccEEEEccEEEEEETTccEEEEEEEEcTTcGGGcHHHHHHHHHHHHHHHHccccccEEEEEEEccccccEEccTTEEEEEGGGTccHHHHHHHTTTcTTTEEEccGGGHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHTTcccccccEEccGGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEcHHHHHHHHHHHHTcccTcTTTHHHHcccccEEEEccccTHHH### DISOP:02AL 1-2, 12-20, 50-54, 486-493| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEcccccEEEEEccccEEEEEEEccEEEEEEEcccEEEEEEEccccccccEEEEEEEEEEEccccccccEEEEcccEEEEEEEEccccEEEEEcccccccccEEEEEEEccccEEEEcccccccEEcccEEEEEEEEcccccccEEEEEEEcEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEEccccccccc //