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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55482.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  58/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
d.2.1
:208 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   42->121 1xsfA PDBj 6e-30 66.2 %
:RPS:PDB   40->116 1b9oA PDBj 2e-11 16.9 %
:RPS:SCOP  40->117 1xsfA1  d.2.1.8 * 3e-13 66.7 %
:RPS:PFM   42->115 PF06737 * Transglycosylas 3e-25 76.7 %
:HMM:PFM   39->115 PF06737 * Transglycosylas 3.7e-36 68.4 76/77  
:HMM:PFM   119->187 PF11574 * DUF3235 2.7e-06 31.8 66/91  
:BLT:SWISS 47->111 SCED_STACT 3e-04 35.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55482.1 GT:GENE BAD55482.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(659137..659763) GB:FROM 659137 GB:TO 659763 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55482.1 LENGTH 208 SQ:AASEQ MSGRHRKPTSTGRTVAKVAVTGAIFGTASAALAGNASAAPDSDWDRLAQCEAGGNWAINTGNGYHGGLQFSPSTWTAHGGQQYAPTANQATREEQIAVAEKVLASQGWGAWPSCSAALGLKSSATPREVPSAPETPRWNPAQPAPQAAPDANQELFQAVDRAIATVQQQGVQIPQPALDFFNAAKANNVQLDPHVVNFFEANKGLLPS GT:EXON 1|1-208:0| BL:SWS:NREP 1 BL:SWS:REP 47->111|SCED_STACT|3e-04|35.4|65/232| SEG 28->39|asaalagnasaa| SEG 140->149|paqpapqaap| BL:PDB:NREP 1 BL:PDB:REP 42->121|1xsfA|6e-30|66.2|80/108| RP:PDB:NREP 1 RP:PDB:REP 40->116|1b9oA|2e-11|16.9|77/123| RP:PFM:NREP 1 RP:PFM:REP 42->115|PF06737|3e-25|76.7|73/77|Transglycosylas| HM:PFM:NREP 2 HM:PFM:REP 39->115|PF06737|3.7e-36|68.4|76/77|Transglycosylas| HM:PFM:REP 119->187|PF11574|2.7e-06|31.8|66/91|DUF3235| GO:PFM:NREP 1 GO:PFM GO:0005576|"GO:extracellular region"|PF06737|IPR010618| RP:SCP:NREP 1 RP:SCP:REP 40->117|1xsfA1|3e-13|66.7|78/86|d.2.1.8| OP:NHOMO 188 OP:NHOMOORG 59 OP:PATTERN -------------------------------------------------------------------- ---1123222132344455-44334455555456764776112111321---122-12----1-324543-------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------- STR:NPRED 113 STR:RPRED 54.3 SQ:SECSTR ########HTTTTccccEEHHHHHHHHHHccGGGHHHHHcHHHHHHHHHHHHTTcEEEccccEEETTTTEETTTTcccTTcTTcccTTcccGGGGHHHHHHHHHHTTTHHHHTTccHcTcc####################################################################################### DISOP:02AL 1-11, 118-150, 207-208| PSIPRED cccccccccccccEEEEEEEEccHHHHHHHHccccccccccccHHHHHHHccccccccccccccccEEEEcHHHHHHcccccccccHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEEccccccHHHHHHHHHHHccccccccHHHHHHHcccccccc //