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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55490.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  155/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.3.1
:297 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  142->288 2ebfX3  d.3.1.17 * 2e-14 3.8 %
:RPS:PFM   142->228 PF01609 * Transposase_11 3e-05 40.3 %
:HMM:PFM   102->296 PF01609 * Transposase_11 2.6e-24 26.1 157/207  
:BLT:SWISS 12->109 Y4SN_RHISN 5e-09 32.3 %
:BLT:SWISS 150->297 T6501_BRUO2 1e-10 33.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55490.1 GT:GENE BAD55490.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(668303..669196) GB:FROM 668303 GB:TO 669196 GB:DIRECTION - GB:PRODUCT putative transposase GB:PROTEIN_ID BAD55490.1 LENGTH 297 SQ:AASEQ MTTLAVTARADLSDAQWARLEPLLPTPKRPGRPSRWTRRRLLDGIRWRIRVGCPWRDIPPQYGSWQAIYALFRRWTRAGVWAHVLRQLQAIADAAEQIGWMVSVDSTIMRAHPHAAGARRHGDHQAEPPGGYRNEPADHALGRSRGGWGTKLHLACEHHLRPLSLLLTAGQAGDSPQFAGVLDGIQVPRLGRGRARVRPDRVLADKAYSSAANRTYLRERGIPATIPVPADQSRHRRNRGRAGGRPPAFDREIYRHRNTIERSINRLKQHRAVATRYEKLATRYLAVIQIAAIDQWL GT:EXON 1|1-297:0| BL:SWS:NREP 2 BL:SWS:REP 12->109|Y4SN_RHISN|5e-09|32.3|93/125| BL:SWS:REP 150->297|T6501_BRUO2|1e-10|33.1|127/130| SEG 29->40|rpgrpsrwtrrr| SEG 110->124|rahphaagarrhgdh| SEG 234->245|rhrrnrgraggr| RP:PFM:NREP 1 RP:PFM:REP 142->228|PF01609|3e-05|40.3|77/192|Transposase_11| HM:PFM:NREP 1 HM:PFM:REP 102->296|PF01609|2.6e-24|26.1|157/207|Transposase_11| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 142->288|2ebfX3|2e-14|3.8|130/192|d.3.1.17| OP:NHOMO 1124 OP:NHOMOORG 157 OP:PATTERN ----------------------------------------------2---2----------------- ----1--3--4------22-2-----3-343-4---9-A9-244--51---1----M---11--2142BA------------4-------------1-----------2---------------3------------44-------G-1-----H---------C82--1--------------2----------------------------------------------------------------------4-1-------2----------------------------------------------------------------------------------------------------------6---48D------7-C1F5m2-----ABBB7D644G5-49-2-25A-L--1--C5-27259-24---1-7-1-----YYYYYYYY211611-1--------------------------------35-----1---8--1-----3-4-----C-B1-1---------3---4---C----------------L191-----------2------------------4--1----------------------------2-3------1-----------2-9---------------------4---------------------------------------8------------------1454--6-----------------------353---1------------------------1-21-----------4-1-2--1Df----TD----------8-----------21-------3-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-6, 29-30, 117-140, 233-241| PSIPRED cccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHcccccccccccccccEEEEEccccccHHHHHHHHHcccEEEEEccccHHHcccccccccccccccccHHHccccEEEcHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHc //