Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55491.1
DDBJ : putative transcriptional regulator
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 12/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
a.121.1
a.4.1
:208 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 3->65 3e7qB PDBj 2e-09 38.1 %
:RPS:PDB 8->203 3bruA PDBj 2e-14 15.7 %
:RPS:SCOP 8->74 3c07A1 a.4.1.9 * 2e-13 34.3 %
:HMM:SCOP 8->74 1z0xA1 a.4.1.9 * 1.3e-13 35.8 %
:HMM:SCOP 83->209 2gfnA2 a.121.1.1 * 7.8e-08 25.2 %
:RPS:PFM 14->60 PF00440 * TetR_N 2e-05 38.3 %
:HMM:PFM 14->60 PF00440 * TetR_N 8.8e-15 38.3 47/47
:HMM:PFM 108->154 PF04218 * CENP-B_N 0.00034 26.1 46/53
:BLT:SWISS 11->189 MTRR_NEIGO 4e-10 25.0 %
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55491.1
GT:GENE BAD55491.1
GT:PRODUCT putative transcriptional regulator
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION complement(669317..669943)
GB:FROM 669317
GB:TO 669943
GB:DIRECTION -
GB:PRODUCT putative transcriptional regulator
GB:PROTEIN_ID BAD55491.1
LENGTH 208
SQ:AASEQ MSSRLSVEERRAHLIEAAIGLAEKKGVAGVTTRDVAQAAGVSLGVVHYCFENKDALMTELVKALSMELRDSVDADETVWQDVGSGKDALQKLVRAGLELMWLNIEATPERQLLTYETTTYALREGEQTPAKLAIAREQYTFNDSTVADILDHARDATGTQWSVPVQTLSRFTLNVIDGLVLRWLVDNDSAAVRDQLDLLAEMVAGYAA
GT:EXON 1|1-208:0|
BL:SWS:NREP 1
BL:SWS:REP 11->189|MTRR_NEIGO|4e-10|25.0|172/210|
BL:PDB:NREP 1
BL:PDB:REP 3->65|3e7qB|2e-09|38.1|63/210|
RP:PDB:NREP 1
RP:PDB:REP 8->203|3bruA|2e-14|15.7|185/188|
RP:PFM:NREP 1
RP:PFM:REP 14->60|PF00440|2e-05|38.3|47/47|TetR_N|
HM:PFM:NREP 2
HM:PFM:REP 14->60|PF00440|8.8e-15|38.3|47/47|TetR_N|
HM:PFM:REP 108->154|PF04218|0.00034|26.1|46/53|CENP-B_N|
GO:PFM:NREP 2
GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647|
GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647|
RP:SCP:NREP 1
RP:SCP:REP 8->74|3c07A1|2e-13|34.3|67/75|a.4.1.9|
HM:SCP:REP 8->74|1z0xA1|1.3e-13|35.8|67/0|a.4.1.9|1/1|Homeodomain-like|
HM:SCP:REP 83->209|2gfnA2|7.8e-08|25.2|119/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain|
OP:NHOMO 20
OP:NHOMOORG 12
OP:PATTERN -------------------------------------------------------------------- ----1---------1---------------------2172-----1------1----1------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 206
STR:RPRED 99.0
SQ:SECSTR ##ccccHGGHHHHHHHHHHHHHHHccTTTccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHTTTTccccHHHHHHHHHHHHHHHTGGccTHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccTTccHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHGGGcHTTcH
DISOP:02AL 1-12|
PSIPRED ccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHc
//
[GTOP]
