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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55492.1
DDBJ      :             putative ceramidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  25/915 : Eukaryota  137/199 : Viruses  0/175   --->[See Alignment]
:697 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   55->674 2zxcA PDBj e-120 43.8 %
:RPS:PFM   60->661 PF04734 * Ceramidase_alk e-110 43.7 %
:HMM:PFM   58->696 PF04734 * Ceramidase_alk 2.9e-217 43.8 634/676  
:BLT:SWISS 55->674 NCASE_PSEAE e-118 43.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55492.1 GT:GENE BAD55492.1 GT:PRODUCT putative ceramidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 670065..672158 GB:FROM 670065 GB:TO 672158 GB:DIRECTION + GB:PRODUCT putative ceramidase GB:PROTEIN_ID BAD55492.1 LENGTH 697 SQ:AASEQ MTRTIEGEQRVGLDRRTLLARSAVGTVALATAGTAATAATVGQGVAAAPALAAPDSGYRVGLGISDITGPAAECGMMGYSQFGQDTAGIHLRPRARAFIFEAGAARVVFAVAENGMIFQSVHRGVLLELARRFGDRYTEQNVLLTSTHSHATCGGASHDYAYNLSVLGFQQQVYDAEVQGIVEAIVAAHEDLSPATLALGRAELHDASVNRSRVAFERNPAEDRAHFPGAIDPAVTALSIRKGGREVGAITWFATHNTSMTNQNRLISSDNKGYAAFAHEHIEHGVRYLDGAPEFIAAFAQTNAGDMSPNLNLRPGSGPTDDEFANTRIIGERQHAASKAALAQAAPVRGPVQSLLCYIDLADIAVDGRFTPDGQPRRTAPAAAGVSLIAGSVEDGPGLPGAPIPEGVRNPLIDALGDPRRPAPSWLADAQAPKVIAAPLGLLPPVPWVPNVVPIQLVRIGELYLAAAGGEFTIVAGLRVRRAVAAALGVDLEQVLLQGYANAYHQYVTTPEEYDAQQYEGGSTLFGRYTLPAYQQEFTRLATALATGGTVARGPAPRDVSHLQPNLVPAPGPDTALPDRTFGDVLVQPAPGYARGEQVVAEFVSAHPKHDPRRNGTFLEVQRRTADGWVRVANEGEWAVRFHWRKTGTATSIARFTWDIPADAAPGRYRFVHFAGRLAPDGSRHPVTGVTDEFDIA GT:EXON 1|1-697:0| BL:SWS:NREP 1 BL:SWS:REP 55->674|NCASE_PSEAE|e-118|43.3|608/670| SEG 23->54|avgtvalatagtaataatvgqgvaaapalaap| SEG 336->346|aaskaalaqaa| SEG 439->454|plgllppvpwvpnvvp| SEG 475->490|vaglrvrravaaalgv| SEG 539->554|trlatalatggtvarg| BL:PDB:NREP 1 BL:PDB:REP 55->674|2zxcA|e-120|43.8|608/643| RP:PFM:NREP 1 RP:PFM:REP 60->661|PF04734|e-110|43.7|575/584|Ceramidase_alk| HM:PFM:NREP 1 HM:PFM:REP 58->696|PF04734|2.9e-217|43.8|634/676|Ceramidase_alk| OP:NHOMO 276 OP:NHOMOORG 162 OP:PATTERN -------------------------------------------------------------------- ----1------1-----11-1---1-1-111-----111---------------------------1--1----------------------------------------------------------------------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1111-------------------------------------------------------22----------------------------------------------------- ----211-------11111111121111111111111111111111222211-111222222---------------------------1211111------1111-1-121-111311-111122131AA3-312-11111121111112-21-111249F121235322---1-11-1---1121361421-43481 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 609 STR:RPRED 87.4 SQ:SECSTR ######################################################cccEEEEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEEETTTEEEEEEEccccccHHHHHHHHHHHHHHcTTTccGGGEEEEEcccccEEccccccHHHHGGGTcccHHHHHHHHHHHHHHHHHHHTTcEEEEEEEEEEEcccccEETTHHHHTTcT##TcTTcTTccccEEEEEEEETTccEEEEEEEcccccccccTTccccccHHHHHHHH###HHHTTTccccc###cEEEEEccccTTEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHTcEEEcccEEEEEEEEEcTTcEEcGGGT#TcccEEcccccEEccccccccccc##ccccccccTTccHHHHHHTcccccccHHHHHHTTTccEEEccTTcccccccccEEEEEEEEETTEEEEEEccEEcHHHHHHHHHHHHHHGGGTccEEEEEEcccccccEEccHHHHHHTcHHHHTcTTcTTHHHHHHHHHHHHHHHHHHTccccccccccccTTcccccccccccccccTTccTTcEEEccccEEETTcEEEEEEEEccGGGcccTTcccEEEEEccccccEEEEETTcTTEEEEEEEETTTEEEEEEEEEccTTcccEEEEEEEE####################### DISOP:02AL 1-2, 4-7, 41-50| PSIPRED cccccccHHHccccEEEEEccccccEEEEcccccccccccccccEEcccccccccccEEEEEEEEEccccEEEEcccccccccccccccEEEEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccEEcccccHHHcccHHHHcccccccccEEEEEEEEccccEEEEEEEccccccEEcccccEEccccccHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccccEEEEEcccccccEEEcccHHHccEEccccccccccccccccccccccccHHHHHHHcccccHHHHHHHccccEEEcccccccccccccEEEEEEEEEEEEEEEEEcccEEEcccHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEEEEccccccccccEEEEEEEEccccEEEEEEccccEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEEEEEEcccccEEEEEEcccccEEc //