[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55494.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  68/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:145 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->140 2hr3D PDBj 4e-05 28.6 %
:RPS:PDB   10->143 2a61A PDBj 4e-10 17.9 %
:RPS:SCOP  14->133 2ethA1  a.4.5.28 * 4e-15 21.7 %
:HMM:SCOP  4->139 1jgsA_ a.4.5.28 * 4.4e-25 27.2 %
:HMM:PFM   35->91 PF01047 * MarR 1.9e-15 35.1 57/59  
:BLT:SWISS 5->144 Y904_MYCBO 3e-34 61.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55494.1 GT:GENE BAD55494.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 672466..672903 GB:FROM 672466 GB:TO 672903 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55494.1 LENGTH 145 SQ:AASEQ MTTPSDVRALAGELSLAVVRLTRHLRGRRTDSPVSLTQLSALATLAREGAMTPGALAAKERVQPPSMTRVIASLSDLKLVERKPHPTDGRQIIVSLSESGRALIADEASAREAWMTEQLSGLTGEQLDVLEQAVAIMKQIVAESE GT:EXON 1|1-145:0| BL:SWS:NREP 1 BL:SWS:REP 5->144|Y904_MYCBO|3e-34|61.2|139/143| SEG 35->46|sltqlsalatla| BL:PDB:NREP 1 BL:PDB:REP 10->140|2hr3D|4e-05|28.6|126/138| RP:PDB:NREP 1 RP:PDB:REP 10->143|2a61A|4e-10|17.9|134/142| HM:PFM:NREP 1 HM:PFM:REP 35->91|PF01047|1.9e-15|35.1|57/59|MarR| RP:SCP:NREP 1 RP:SCP:REP 14->133|2ethA1|4e-15|21.7|120/140|a.4.5.28| HM:SCP:REP 4->139|1jgsA_|4.4e-25|27.2|136/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 90 OP:NHOMOORG 68 OP:PATTERN -------------------------------------------------------------------- --1-2---------12211-1111121-1111-11112321212111-1-11-1---1--111-1111231----------------------------------1------------------------------111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------1----------1---------------------------------------------1222221----22-1------212------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 138 STR:RPRED 95.2 SQ:SECSTR #######ccHHHHHHHHHHHHHHHHHTTHHHHTccHHHHHHHHHHHHHccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcc DISOP:02AL 1-2, 143-145| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc //