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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55496.1
DDBJ      :             putative ribosomal RNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  732/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.116.1d.79.3
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   124->264 3gyqA PDBj 2e-11 29.3 %
:RPS:PDB   124->265 3e5yA PDBj 6e-25 21.3 %
:RPS:SCOP  21->106 1ipaA2  d.79.3.3 * 5e-11 17.1 %
:RPS:SCOP  124->265 1gz0A1  c.116.1.1 * 7e-32 31.9 %
:HMM:SCOP  5->107 1ipaA2 d.79.3.3 * 1.6e-15 30.3 %
:HMM:SCOP  97->268 1v2xA_ c.116.1.1 * 2.1e-42 32.5 %
:RPS:PFM   124->261 PF00588 * SpoU_methylase 2e-20 43.8 %
:HMM:PFM   121->261 PF00588 * SpoU_methylase 1e-34 32.4 139/142  
:BLT:SWISS 25->266 Y905_MYCBO 2e-83 65.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55496.1 GT:GENE BAD55496.1 GT:PRODUCT putative ribosomal RNA methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 673402..674205 GB:FROM 673402 GB:TO 674205 GB:DIRECTION + GB:PRODUCT putative ribosomal RNA methyltransferase GB:PROTEIN_ID BAD55496.1 LENGTH 267 SQ:AASEQ MAEVIDVDDPADPRVDDFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTPSALLGVARRYDQLAADLAAVDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLGSMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQLIAMTPDPAARNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVATAAAMAFYERVRTA GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 25->266|Y905_MYCBO|2e-83|65.3|242/288| SEG 6->20|dvddpadprvddfrd| SEG 68->77|laadlaavdv| SEG 112->123|aevvarartvav| BL:PDB:NREP 1 BL:PDB:REP 124->264|3gyqA|2e-11|29.3|140/261| RP:PDB:NREP 1 RP:PDB:REP 124->265|3e5yA|6e-25|21.3|141/156| RP:PFM:NREP 1 RP:PFM:REP 124->261|PF00588|2e-20|43.8|137/143|SpoU_methylase| HM:PFM:NREP 1 HM:PFM:REP 121->261|PF00588|1e-34|32.4|139/142|SpoU_methylase| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 2 RP:SCP:REP 21->106|1ipaA2|5e-11|17.1|82/100|d.79.3.3| RP:SCP:REP 124->265|1gz0A1|7e-32|31.9|141/166|c.116.1.1| HM:SCP:REP 5->107|1ipaA2|1.6e-15|30.3|99/105|d.79.3.3|1/1|L30e-like| HM:SCP:REP 97->268|1v2xA_|2.1e-42|32.5|169/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 1028 OP:NHOMOORG 748 OP:PATTERN -----------------------1-------------------------------------------- 2323123322232322222-22111122222121111111131211132222111211--2211223222222221112232--1-112222-1111-111111111-21--------11----1222-211111-11123---3232-211-221111111122221122111111-12111222111-12122222222222222221211122222222--111111121111111111111111211111-1221211-1--3311-111112-122221111--1111111111122222222222222222222221-1-21111-1-12-21-1111112-21211321222121-1-1221----1-2333313--1--12111---11-33332333333-2212222233113333322333222223111111111-1111111111-1-1222111-----11111111111111111-----221111111121111212222221-2222211211111--11121111111111112122111-111111211-12-1--1----1-----111-----111-111211--11------1-11-11111--13111111121-11-11111111111111111111--11-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111111111111111111121111111-1111-11111----1----11111111111111--1-1--1111111--1-33--11--------111-------1-1-----------1--111----1----21 --------------------11--------------1-----------------------------------------------------------------------2------------------------------------------------------1-1-------------3221---111---2-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 142 STR:RPRED 53.2 SQ:SECSTR ###########################################################################################################################EEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGGGEEEEccTcTcEEGGGccccTTcEEEEEcTTTcccHHTTccGGGEEEcccccccccccHHHHHHHHHHHHHH## DISOP:02AL 1-2, 20-35| PSIPRED cccEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEcHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHccccEEEEcHHHHHHHHccccccEEEEEEEccccccHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHccHHHcccEEEEccHHHHHHHHHHcccEEEEEEcccccccHHHHcccccEEEEEccccccccHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHcc //