[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55508.1
DDBJ      :             putative two-component system sensor kinase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  243/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.30.2d.122.1
:467 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   305->451 1ysrC PDBj 9e-23 56.0 %
:RPS:PDB   244->405 1b3qA PDBj 6e-14 12.5 %
:RPS:SCOP  244->296 2c2aA1  a.30.2.1 * 8e-04 30.2 %
:RPS:SCOP  305->404 1ys3A1  d.122.1.3 * 1e-16 54.5 %
:HMM:SCOP  217->303 2c2aA1 a.30.2.1 * 2.8e-09 29.9 %
:HMM:SCOP  304->452 1ysrA1 d.122.1.3 * 1.2e-30 31.1 %
:RPS:PFM   75->136 PF08308 * PEGA 4e-04 35.5 %
:HMM:PFM   345->449 PF02518 * HATPase_c 1.4e-21 37.5 104/111  
:HMM:PFM   237->297 PF00512 * HisKA 3.8e-12 34.4 61/68  
:HMM:PFM   153->222 PF00672 * HAMP 1.3e-11 40.3 67/70  
:HMM:PFM   90->134 PF08308 * PEGA 7.1e-05 35.6 45/71  
:BLT:SWISS 79->451 PRRB_MYCLE 1e-60 49.9 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55508.1 GT:GENE BAD55508.1 GT:PRODUCT putative two-component system sensor kinase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(684215..685618) GB:FROM 684215 GB:TO 685618 GB:DIRECTION - GB:PRODUCT putative two-component system sensor kinase GB:PROTEIN_ID BAD55508.1 LENGTH 467 SQ:AASEQ MSAPRPKARRRRTFSLRTRVAGAAAAGAVIIVTLLSAVAVRAIERINLQQSDQQLTVASRLVLIDPVIAVGVLGLTGLNDDMAVTVRDGGAVVASSPVRLPDLPTGSRTVTVSGTQYRVLTTTENQPAGRTVSLGIPADEAARVTAEQQRWVLGGALLAVAAAGALGWLLAGRAVRPIVDLTEQVGARSAFGADDARPPVDGSGVRESEQLAEAVNTMLARVDQAQAETAAALATARDFAAVSAHELRTPLTAMRTDLEVLRTLDLNEEQRAEILADLQRSQGRVESTLAALERLATGDLTHARDHVDTDVGELCDQAAHDAMRHFPGLTVRIDTDADLVTRGLPAGLRLAVDNALANSVKHGGATEAVVSAHRGADGGIVIAVDDNGRGIPTDERELVFRRFFRGSQASKGGSGLGLALVAQQAQLHGGRAYFDDSPLGGARLVLELPQPDRNSDQHIDSAGLRSH GT:EXON 1|1-467:0| BL:SWS:NREP 1 BL:SWS:REP 79->451|PRRB_MYCLE|1e-60|49.9|369/446| COIL:NAA 28 COIL:NSEG 1 COIL:REGION 268->295| TM:NTM 3 TM:REGION 23->45| TM:REGION 56->78| TM:REGION 150->172| SEG 9->32|rrrrtfslrtrvagaaaagaviiv| SEG 150->176|rwvlggallavaaagalgwllagravr| SEG 220->242|arvdqaqaetaaalatardfaav| SEG 406->430|gsqaskggsglglalvaqqaqlhgg| BL:PDB:NREP 1 BL:PDB:REP 305->451|1ysrC|9e-23|56.0|134/136| RP:PDB:NREP 1 RP:PDB:REP 244->405|1b3qA|6e-14|12.5|160/368| RP:PFM:NREP 1 RP:PFM:REP 75->136|PF08308|4e-04|35.5|62/71|PEGA| HM:PFM:NREP 4 HM:PFM:REP 345->449|PF02518|1.4e-21|37.5|104/111|HATPase_c| HM:PFM:REP 237->297|PF00512|3.8e-12|34.4|61/68|HisKA| HM:PFM:REP 153->222|PF00672|1.3e-11|40.3|67/70|HAMP| HM:PFM:REP 90->134|PF08308|7.1e-05|35.6|45/71|PEGA| RP:SCP:NREP 2 RP:SCP:REP 244->296|2c2aA1|8e-04|30.2|53/89|a.30.2.1| RP:SCP:REP 305->404|1ys3A1|1e-16|54.5|99/137|d.122.1.3| HM:SCP:REP 217->303|2c2aA1|2.8e-09|29.9|87/0|a.30.2.1|1/1|Homodimeric domain of signal transducing histidine kinase| HM:SCP:REP 304->452|1ysrA1|1.2e-30|31.1|148/0|d.122.1.3|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| OP:NHOMO 364 OP:NHOMOORG 245 OP:PATTERN ---------------------------1---------------------1------------------ --1-31-11111-233311-13221411111154442334--11----1-----11-1--11212-34211---------11-------------------------------------------11-1-----------1---1--------------------------------------1-------------------------11---------------------1------------------------------------------------------11---------------------------111----------------------------------1----1----------------11221-----112----2-1-1-111-1-11112-24-22132111-311-42-3321215-132-21111-2---------3111232-----------------------------------------221213-322-33232221-134-1132--1211-----1-11-1------------------112---1-1---------1----1--1--1-1--------------------------------1-2---1---------1----------------1-------1------11-1111111-1111111111111111111-1--1---1111111111-11111-1--1111---------------------------1-2---------------------------------1131---11---1-----------1-------------11-------------1--------------------------------------------1-1-1-111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 48.0 SQ:SECSTR ###################################################################################################################################################################################################################################################cccccccHHHHHHHHHHHHHcHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHTTccEEEEEEcTTcEEEHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHTTccccEEEEEEEEccccccHHHHHHHHHHcccTTccGGGccccHHHHHHHHHHHTTcEEEEEEETTTEEEEEEEEEGGcccccccccHHHHHHc DISOP:02AL 1-4, 6-8, 190-202, 266-271, 409-411, 450-467| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccEEEEEcccccEEcccccccccccccccEEccccccEEEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEEccccccHHHHHHHcccEEEccccccccccHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEccccccccccccccccccc //