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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55522.1
DDBJ      :             putative ATP-dependent DNA ligase
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  224/915 : Eukaryota  48/199 : Viruses  2/175   --->[See Alignment]
b.40.4d.142.2
:808 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->277 2r9lB PDBj 9e-96 64.9 %
:BLT:PDB   524->805 1vs0B PDBj 4e-60 46.8 %
:RPS:PDB   515->773 1cknB PDBj 1e-30 17.2 %
:RPS:SCOP  522->697 1fviA2  d.142.2.1 * 3e-26 17.5 %
:RPS:SCOP  706->805 1a0iA1  b.40.4.6 * 1e-14 10.1 %
:HMM:SCOP  516->699 1a0iA2 d.142.2.1 * 1.6e-44 37.2 %
:HMM:SCOP  699->807 1a0iA1 b.40.4.6 * 3.1e-16 37.9 %
:RPS:PFM   535->697 PF01068 * DNA_ligase_A_M 2e-15 36.8 %
:RPS:PFM   690->740 PF09916 * DUF2145 9e-04 29.4 %
:RPS:PFM   719->797 PF04679 * DNA_ligase_A_C 9e-12 46.2 %
:HMM:PFM   522->698 PF01068 * DNA_ligase_A_M 6.3e-33 35.2 176/202  
:HMM:PFM   717->805 PF04679 * DNA_ligase_A_C 9.7e-24 42.5 87/96  
:HMM:PFM   152->253 PF01896 * DNA_primase_S 1.6e-13 18.6 102/145  
:BLT:SWISS 18->456,520->805 Y963_MYCBO e-149 60.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55522.1 GT:GENE BAD55522.1 GT:PRODUCT putative ATP-dependent DNA ligase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 700299..702725 GB:FROM 700299 GB:TO 702725 GB:DIRECTION + GB:PRODUCT putative ATP-dependent DNA ligase GB:PROTEIN_ID BAD55522.1 LENGTH 808 SQ:AASEQ MASRRAFDGGAGRPPVEVELSNLDKVLYPATGTTKGEVIAYYTAIAEAMLPHIAGRPVTRKRWPNGVEAPSFFEKNLAEHAPPWLERRVLEHSDRRVAYPLIDSEAGLAWIGQQASLEVHVPQWRFDGAAMGPATRIVFDLDPGPGVGLPECAEVALAVRDMIEDIGMHAFPVTSGSKGIHLYVPLDRVLSPGGASTVAKQVATNLEKLRPDLVTATMAKAVRRGKVFLDWSQNNPAKTTIAPYSLRGRAEPNAAAPRTWAEIEDAATLRHLRFDEVLARWRDDGDLLADLDPPLSRRGADALPGGADALAKYRSMRDPARTPEPVPAEPPSRGADNRFVVQEHHARRLHWDVRLERDGVLASWAVPKGPPTTPKQNRLAVHTEDHPLEYLHFHGVIPKGEYGAGEMTIWDTGTYETEKWRDDEVIVRFHGSKLTGRYALIQTNGNQWLMHLMREQPADAETPVGAETPVGAEDSGGPAVDAEIRDETAGDADAAGGRRSRTTAGAEVGRRGATPVPRGLSPMLAVSGEVGPLDGEQWCFETKWDGFRLIAEIDAGAVTLRSRAGNVVTDRYPRIAAVLAEELAGHRAVLDGEAVVFDEHNVAQVALLQADPARAEFVAFDVLYLDGTSLLRKRFADRRRVLEALGAAAPSLRVPPALDGPGAEALRYSEEHGLEGVIAKRWDSVYLPGKRGHSWVKQRNWRIQPVVVGGYRRSGARDFKSLLVGIPHDGELIYVGRVGTGFGEQDMTALARRLRGLERKTSPFANALTAEERKEAVWVRPTITGRVRFMNWTDTGRLWHPAWLGEDD GT:EXON 1|1-808:0| BL:SWS:NREP 1 BL:SWS:REP 18->456,520->805|Y963_MYCBO|e-149|60.4|713/759| SEG 278->295|larwrddgdlladldppl| SEG 299->311|gadalpggadala| SEG 485->506|rdetagdadaaggrrsrttaga| BL:PDB:NREP 2 BL:PDB:REP 18->277|2r9lB|9e-96|64.9|259/282| BL:PDB:REP 524->805|1vs0B|4e-60|46.8|278/300| RP:PDB:NREP 1 RP:PDB:REP 515->773|1cknB|1e-30|17.2|233/316| RP:PFM:NREP 3 RP:PFM:REP 535->697|PF01068|2e-15|36.8|163/201|DNA_ligase_A_M| RP:PFM:REP 690->740|PF09916|9e-04|29.4|51/201|DUF2145| RP:PFM:REP 719->797|PF04679|9e-12|46.2|78/101|DNA_ligase_A_C| HM:PFM:NREP 3 HM:PFM:REP 522->698|PF01068|6.3e-33|35.2|176/202|DNA_ligase_A_M| HM:PFM:REP 717->805|PF04679|9.7e-24|42.5|87/96|DNA_ligase_A_C| HM:PFM:REP 152->253|PF01896|1.6e-13|18.6|102/145|DNA_primase_S| GO:PFM:NREP 9 GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF01068|IPR012310| GO:PFM GO:0005524|"GO:ATP binding"|PF01068|IPR012310| GO:PFM GO:0006260|"GO:DNA replication"|PF01068|IPR012310| GO:PFM GO:0006281|"GO:DNA repair"|PF01068|IPR012310| GO:PFM GO:0006310|"GO:DNA recombination"|PF01068|IPR012310| GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF04679|IPR012309| GO:PFM GO:0006260|"GO:DNA replication"|PF04679|IPR012309| GO:PFM GO:0006281|"GO:DNA repair"|PF04679|IPR012309| GO:PFM GO:0006310|"GO:DNA recombination"|PF04679|IPR012309| RP:SCP:NREP 2 RP:SCP:REP 522->697|1fviA2|3e-26|17.5|166/184|d.142.2.1| RP:SCP:REP 706->805|1a0iA1|1e-14|10.1|89/101|b.40.4.6| HM:SCP:REP 516->699|1a0iA2|1.6e-44|37.2|183/0|d.142.2.1|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 699->807|1a0iA1|3.1e-16|37.9|103/0|b.40.4.6|1/1|Nucleic acid-binding proteins| OP:NHOMO 682 OP:NHOMOORG 309 OP:PATTERN 11----1---------2-111112---1---1-----------2112111222-1111111111311- 137-7---------46644-46--56444445688A648732--3612-1--464-----668-238365----------1--11--------------4-2-2-412-1--------------2--------------1-111--------------------------------------------11-2-1---------------212212------21--------23---------------------------------------------------------------------------------------------------------2-------1----2--1211-222223311------1-1116-----4372341111211----------2------2--491-25523644656811-1--1211111----------111-1-1-------------------------------1221--1--11121111----21251211---22331---11--211-1-1-3----1--1-----------112-1--------------111---2--447412---------------------------------------------------------------------------------------------------------------------------------------------------------------1-111---1--------------------------------11111-11211112111------------------------3213133111------------------------------------------------------------13- ------3---1---1-----------------------------------1-----------1-1----1-1111------111-111--1-----1111-1-1---11-21---------------1-161-1-2----1--21--------------131-1---------11-1118----2-------------- ------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------1-- STR:NPRED 550 STR:RPRED 68.1 SQ:SECSTR #################cccccTTcEEETTTTEEHHHHHHHHHHHHHHHHHHHTTcccEEEEcTTcTTcccEEEccccTTccTTcEEEEEEETTEEEEEEEcccHHHHHHHHHTTccEEEEccEEEEEcTEEEEEEEEEEEEEcTTccHHHHHHHHHHHHHHHHHTTcccEEEEcccccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHcTTTEEccccGGGTTTcEEEEcGGGcTTccEEcTTccccccccEEcEEccHHHHTcTT#cccEEHHHH#############################################################################################################################################################################################################################################cccccEEEEEccGGGHHHHHTcccEEEEEEccEEEEEEEEEEEEEEEETTccEEEcccccccGGGGGcccccEEEEEEEEEEcTTTHHHHHHHHccTTccEEEEEEEEEEETTEEcTTccHHHHHHHHHHHTcccccEEEcccEETTcHHHHHHHTTccEEEEEEEEcccccccEcEEEEEEETTcccEEEEEEEETTTEEEEEEEEEEEEcGGGTEEEEEEEccccccTTcEEEEEEETTEEEEccccccccHHHHTTcccEEEccccEEEEEccEEETTccEEccEEEE### DISOP:02AL 1-18, 297-339, 480-512| PSIPRED cccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEccccccccccEEEEEcccccccccEEEccHHHHHHHHHccEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccEEEEEEEEcccccEEEEEccccccccccEEEEEEHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccEEEEEEccccccccEEEEEEccEEEEEEEEcccccccHHcEEEccEEEEEEEEEcccccccccccccEEEEEEEEccccccccccccEEEEEEccEEEEEEEEEEEccccEEEEEEccHHccccHHHHHHHHccHHHccccHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccHHHHcccccccEEEEEEEccEEEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccHHHHHHHcccEEEEEEEEEcccccccccccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccEEEEEEEEEcccccccEEcEEEEEEcc //