[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55526.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  902/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:715 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   245->421 1z47A PDBj 3e-15 39.9 %
:BLT:PDB   462->669 2yz2B PDBj 3e-35 41.5 %
:RPS:PDB   219->419 3dmdC PDBj 4e-25 12.4 %
:RPS:PDB   438->670 3dmdC PDBj 2e-34 12.8 %
:RPS:SCOP  236->419 1sgwA  c.37.1.12 * 2e-23 14.1 %
:RPS:SCOP  462->670 1b0uA  c.37.1.12 * 3e-34 26.0 %
:HMM:SCOP  236->439 1pf4A1 c.37.1.12 * 4.5e-45 45.0 %
:HMM:SCOP  464->676 1ii8.1 c.37.1.12 * 7.2e-49 36.6 %
:RPS:PFM   506->617 PF00005 * ABC_tran 6e-09 39.4 %
:HMM:PFM   277->389 PF00005 * ABC_tran 2e-15 33.9 109/118  
:HMM:PFM   506->618 PF00005 * ABC_tran 4.1e-19 29.1 110/118  
:HMM:PFM   264->280 PF02463 * SMC_N 0.00046 58.8 17/220  
:HMM:PFM   588->662 PF02463 * SMC_N 3.2e-05 38.4 73/220  
:HMM:PFM   36->152 PF09991 * DUF2232 3.7e-06 15.4 117/290  
:BLT:SWISS 203->668 Y2353_MYCBO 5e-97 48.8 %
:PROS 361->375|PS00211|ABC_TRANSPORTER_1
:PROS 591->605|PS00211|ABC_TRANSPORTER_1
:TM
:REPEAT 2|207->419|436->648
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55526.1 GT:GENE BAD55526.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(704946..707093) GB:FROM 704946 GB:TO 707093 GB:DIRECTION - GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD55526.1 LENGTH 715 SQ:AASEQ MSDLPTDPLAGPPERGPLRPIELAAGAVLGGVTVGLVTVGSVVPFAAALQLVAAVPMGMLAHRYRVRALVTATVAATLVTFVAAGVMPALGVVGTATIGGIIGGVKRSGRGLLTVCVAALAAGVLWAAFTVGSLLVFAQTRNLLFDTIRNTAGGVRKLAESRPELEPLGRGVDAATDAVLTWWWAWVGGGVLVGILVSAVCSWFVLGSVLDRLAWLPSRDRLDAPVDDRPIGPLPVTLRAAGFRYPGAAVDALTGIDLTVAPGEFVAVVGHNGSGKSTLTRLLAGLPPTSGAVWRPGSAGLGHLGGTALVLQRPESQTLGVLVADDVVWGLPTELAAQVDVAALLREVGLDGMGDRETATLSGGQQQRLAVAAAMARRPALLIADEATSMIDPQGRRELVALLRELPRRHGMAVVLVTHHEADAAAADRVVHLAAGRMVDRLPVWPQPLRDTRRRAMGPPVLELHGVRHTYNRGTPWEAPALHGIDLVVRRGEALLVVGGNGSGKSTLAWIIAGLIEPTAGRCELAGRPVTRQIGRVELAFQHSRLQLQKQTVGAEIADWGGRATGSGAVGRALDAVGLDRALAARSIEELSGGQARRVVLAAIVASRPQVVVLDEPLAGLDPKGRADIVELLARLRDSGLTLIVISHDVEDMAAVCDRTVHLREGRLVAGEPVGAPVRTEEATPAEGIAITEDPLRPRAARRGRAWGFEHGSGR GT:EXON 1|1-715:0| BL:SWS:NREP 1 BL:SWS:REP 203->668|Y2353_MYCBO|5e-97|48.8|463/697| PROS 361->375|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 591->605|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 4 TM:REGION 28->50| TM:REGION 75->97| TM:REGION 115->137| TM:REGION 184->206| NREPEAT 1 REPEAT 2|207->419|436->648| SEG 23->43|laagavlggvtvglvtvgsvv| SEG 65->86|rvralvtatvaatlvtfvaagv| SEG 91->105|gvvgtatiggiiggv| SEG 112->128|lltvcvaalaagvlwaa| SEG 178->200|avltwwwawvgggvlvgilvsav| SEG 365->384|qqqrlavaaamarrpallia| SEG 422->435|adaaaadrvvhlaa| SEG 697->706|rpraarrgra| BL:PDB:NREP 2 BL:PDB:REP 245->421|1z47A|3e-15|39.9|167/345| BL:PDB:REP 462->669|2yz2B|3e-35|41.5|205/263| RP:PDB:NREP 2 RP:PDB:REP 219->419|3dmdC|4e-25|12.4|190/318| RP:PDB:REP 438->670|3dmdC|2e-34|12.8|219/318| RP:PFM:NREP 1 RP:PFM:REP 506->617|PF00005|6e-09|39.4|109/123|ABC_tran| HM:PFM:NREP 5 HM:PFM:REP 277->389|PF00005|2e-15|33.9|109/118|ABC_tran| HM:PFM:REP 506->618|PF00005|4.1e-19|29.1|110/118|ABC_tran| HM:PFM:REP 264->280|PF02463|0.00046|58.8|17/220|SMC_N| HM:PFM:REP 588->662|PF02463|3.2e-05|38.4|73/220|SMC_N| HM:PFM:REP 36->152|PF09991|3.7e-06|15.4|117/290|DUF2232| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 236->419|1sgwA|2e-23|14.1|181/200|c.37.1.12| RP:SCP:REP 462->670|1b0uA|3e-34|26.0|204/258|c.37.1.12| HM:SCP:REP 236->439|1pf4A1|4.5e-45|45.0|200/244|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 464->676|1ii8.1|7.2e-49|36.6|205/370|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 39038 OP:NHOMOORG 1159 OP:PATTERN UVI7HFEDJKLIJFJLfCLMKKKPlKOcdQfSB9C899ABAA9UVQReKO*sZ8IVKPUJIBF8T177 NUlP*ccekknbdXXXWPP-Pi88V*PPPPPNunnpv***V*Z*w**lsleO**xNRfDD**zo*u****dYTTTzZXRLyYiA5997MLJF2EBCA--78IACFSGRIH46776765447777BSNEKSFGQPRMdmlrrDFFsSdXaoTSbXbXZNGKEKHWSZirrtQBMCA98BNAAD8hVXGESO6VWh********o*******ytspu***Yhp*qfhjjkfhf**RWYYWXVSWWXXWWWUNKQQfQVRooNNOOPkhJJrsULKLXTWXXbaccgdhggcfhffccfidhgWUUUUWWZXWWUVfYWTSTZXZWQ*enqefehmkhNgOZheeLRSQrTSVT*UbPH**ceXTXXLYXTUOHNNYDcVRRMEDIFHZT***VOl****s***********-ll*ld*m***QC**************FJL**********ONOOOOOOtYbHPic*663434443322659A7676646655363ABBFFE***y*******zvuwp*****z**g*******z9Juvo*goej*w****WhgMSIPkUIIHFFFFMNPReaNl*PYRjiQfiXWh9XXWRRVZQRacSbpzTr8EFHADCCCCA896886866CL7BDIHlooOmRJGKEeROTURJNYQPPQOQZOSRS6-AJbRM------*w**W*wx***y*y*vw-*ywz*z*yy***yvwwwvt*****bZYqsmmpoqpopmnpnmn*urluutwR1y***********23GG9B999JIJHPFzm*TSSYTVILMKHQMSaKLNMLDMGKOkYrqntu***p**s*d***898688889FZgfohiiiiqpjpnNJQJKJKKLJCAAA33MHGGEGBD55563464bBDA7856-7995BA999879E868668ITQGFXlXVWAVO --119A9-MG67AIE5374488965596645555644323-33221345675D7255344453--1122-2223232223111-1-31-3233244635541934427L7C9GBLBK64617C9PN7M5s*G3GAJB943F66IC69752G64h7FCAU9Jq7EAJ5FEGvDFE699FB*965B9PGKd4RG9BSFSLE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4, 6-20, 216-232, 694-715| PSIPRED cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHccEEEEEEEccHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHccccHHHHHHHHHHcccccccccccccccHHcccccccccHHHHHHccccccccccccccccccccEEEEEEEEEEccccEEEEEcccEEEcccEEEEEEccccccHHHHHHHHHcccccccEEEEcccHHHHHHcccEEEEEcHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHcHHEEEEccEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccEEEEEEccccccHHHHHHHHHccccccccEEEEccccHHHHHHHcEEEEccHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHcccHHcccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEEccEEEEcccHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccc //