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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55528.1
DDBJ      :             putative RNA pseudouridylate synthase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  893/915 : Eukaryota  145/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->206 2i82C PDBj 2e-22 43.1 %
:RPS:PDB   17->228 2ab4A PDBj 1e-22 13.1 %
:RPS:SCOP  16->231 1v9kA  d.265.1.3 * 2e-40 34.5 %
:HMM:SCOP  2->237 1przA_ d.265.1.3 * 5.7e-45 40.7 %
:RPS:PFM   20->181 PF00849 * PseudoU_synth_2 1e-17 48.6 %
:HMM:PFM   20->182 PF00849 * PseudoU_synth_2 2.6e-32 36.5 148/164  
:BLT:SWISS 13->214 RLUA_SHIFL 2e-25 38.3 %
:PROS 54->68|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55528.1 GT:GENE BAD55528.1 GT:PRODUCT putative RNA pseudouridylate synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(708732..709514) GB:FROM 708732 GB:TO 709514 GB:DIRECTION - GB:PRODUCT putative RNA pseudouridylate synthase GB:PROTEIN_ID BAD55528.1 LENGTH 260 SQ:AASEQ MDTDWSRLRERCLLAEDDAVLALNKPAGISVTGERHDTDIVELAAGAGERLFPVHRIDKVTSGLVLLAKDLAAHGTLTRQFTKRTAEKAYLAVVAGGGLPDRGVIELPLSVGRKNRVRIAAPRESIRAEDGRWFVDDADLLAVKNYPSRTEFVTLARTADRTVLALRPVTGRRHQIRVHLAWIGHAIVGDPLFDKSAAHPRAHLHSWRLVLDAPWRTPPELDLTAPPDAGFWAPLGAGADPGELLAGAAESLRGEPHADA GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 13->214|RLUA_SHIFL|2e-25|38.3|183/219| PROS 54->68|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 13->206|2i82C|2e-22|43.1|167/208| RP:PDB:NREP 1 RP:PDB:REP 17->228|2ab4A|1e-22|13.1|199/300| RP:PFM:NREP 1 RP:PFM:REP 20->181|PF00849|1e-17|48.6|140/149|PseudoU_synth_2| HM:PFM:NREP 1 HM:PFM:REP 20->182|PF00849|2.6e-32|36.5|148/164|PseudoU_synth_2| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 1 RP:SCP:REP 16->231|1v9kA|2e-40|34.5|197/227|d.265.1.3| HM:SCP:REP 2->237|1przA_|5.7e-45|40.7|214/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2538 OP:NHOMOORG 1041 OP:PATTERN ---------------------------------------1-11------------------------- 2121111133211211123-41111122222121113211122211221111122221111111211111121111112111111111222312-111-21112134313-2221221-111112111111111111222211131123222311222212213112222113111113111121211221432-2222222322222222333322233333222222224422222221222222212222-34344343334444444443333333332222323333333333333333333333333321111222222222222222222222222111222211232122141111112222121214333322222323222332322222222222223-3233333322312332222222223344333333333333333333332233342222222221--1222222222122121122333331111222232222222221222222222222222222253524344422333222255122222212215461323251234112123234332454558422221212333322332333124323222555424537746878899755577-977782-3233211111133444553333333343-3334333434333333333444444453433333333333333533433433-444444444344122322222222233535555454444444445443243433445444444334-3334443121212212577755555566766454444444421112142221111111312222-211111-111111-1111111-1---1211221222231 -----1------223111--1111-1--------1-----------111111-----11---21222211332223322322212211-14112121-1111121--2513232212-11112121121483-32312-13133112111331223121-112322-4223--1-11117656-121121447731234 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 88.5 SQ:SECSTR #TccccGGGccHHHHHccEEEEEEEcccccHHGGGHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGEEEEGGGGGTTccEEEEEEEEETEEETTccTTccEEEEccccccHHHHHHHHHTTcEEEEEcccccccccccEEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEEEEETTEETTTcccTTTccHHHHHHHcEccc############################# DISOP:02AL 1-2, 254-255, 257-260| PSIPRED cccHHHHHcccEEEEEcccEEEEEccccEEEcccccccHHHHHHHHcccccEEEEEccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEcccccccccEEEEEccccEEcccccEEEcccccccccccccEEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHccccEEccccccccccccccEEEEEEEEEEcccccccEEEEEccccHHHHHHHHHccccHHHHHHHHHHHcccccccc //