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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55530.1
DDBJ      :             putative Orn/Lys/Arg decarboxylase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  357/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
c.67.1d.125.1
:486 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   7->299,406->474 1ordA PDBj 2e-15 31.8 %
:RPS:PDB   10->444 1cj0A PDBj 2e-22 15.2 %
:RPS:SCOP  7->378 1c4kA2  c.67.1.5 * 1e-59 26.2 %
:RPS:SCOP  372->484 1c4kA3  d.125.1.1 * 6e-14 24.5 %
:HMM:SCOP  6->390 1c4kA2 c.67.1.5 * 3.6e-80 31.1 %
:HMM:SCOP  341->485 1c4kA3 d.125.1.1 * 7.3e-34 41.4 %
:RPS:PFM   6->347 PF01276 * OKR_DC_1 2e-47 36.3 %
:RPS:PFM   406->467 PF03711 * OKR_DC_1_C 4e-14 56.5 %
:HMM:PFM   7->307 PF01276 * OKR_DC_1 7.3e-52 30.2 298/417  
:HMM:PFM   408->471 PF03711 * OKR_DC_1_C 1.6e-16 48.4 64/137  
:BLT:SWISS 7->484 SPEA_BACAN 6e-76 33.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55530.1 GT:GENE BAD55530.1 GT:PRODUCT putative Orn/Lys/Arg decarboxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(710776..712236) GB:FROM 710776 GB:TO 712236 GB:DIRECTION - GB:PRODUCT putative Orn/Lys/Arg decarboxylase GB:PROTEIN_ID BAD55530.1 LENGTH 486 SQ:AASEQ MDHSRAPLVEALEEYHRLGRYGFTPPGHRQGRGADERVLEVIGAYAFRADVLASAGLDDRLSRGGYLSDAEKLMADAVGADTAFFSTCGSSLSVKAAMMAVAGGQDGGLLVPRDSHKSIVAGLIFAGVQPRWITPRWDEQRHFSHPPSPEQVREAWERHPDAAGALIVSPSPYGTCADIEGIAKVCHERGKPLIVDEAWGAHLPFHPDLPTWAMDVGADLCVVSVHKMGAGFEQGSVFHLQGDLVDPARLSACADLLMTTSPNVLVYTALDGWRRQMVEHGRELLGEALRVARRARTELGQIPGVEVMEDELLGVEASHDLDRLQVLMDISGTGATGYEAADWLRENRRIDVGLSDHRRILATLSLADDDETITALVNAVAAWREQLAEPAPHHIRLPEPDELQLESVMLPRDAFFGRVETVPIEEAPGRICAEQITPYPPGIPAALPGELLNRPVVEYLRSAHEAGMNLPDAADSELKTLRVVAN GT:EXON 1|1-486:0| BL:SWS:NREP 1 BL:SWS:REP 7->484|SPEA_BACAN|6e-76|33.6|473/493| BL:PDB:NREP 1 BL:PDB:REP 7->299,406->474|1ordA|2e-15|31.8|358/730| RP:PDB:NREP 1 RP:PDB:REP 10->444|1cj0A|2e-22|15.2|409/464| RP:PFM:NREP 2 RP:PFM:REP 6->347|PF01276|2e-47|36.3|339/368|OKR_DC_1| RP:PFM:REP 406->467|PF03711|4e-14|56.5|62/95|OKR_DC_1_C| HM:PFM:NREP 2 HM:PFM:REP 7->307|PF01276|7.3e-52|30.2|298/417|OKR_DC_1| HM:PFM:REP 408->471|PF03711|1.6e-16|48.4|64/137|OKR_DC_1_C| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF01276|IPR000310| GO:PFM GO:0003824|"GO:catalytic activity"|PF03711|IPR008286| RP:SCP:NREP 2 RP:SCP:REP 7->378|1c4kA2|1e-59|26.2|370/462|c.67.1.5| RP:SCP:REP 372->484|1c4kA3|6e-14|24.5|110/161|d.125.1.1| HM:SCP:REP 6->390|1c4kA2|3.6e-80|31.1|379/462|c.67.1.5|1/1|PLP-dependent transferases| HM:SCP:REP 341->485|1c4kA3|7.3e-34|41.4|133/161|d.125.1.1|1/1|Ornithine decarboxylase C-terminal domain| OP:NHOMO 617 OP:NHOMOORG 370 OP:PATTERN -------------------------------------------1-11--------------------- --------------111--------1------11111-1----11-----------------1-1---12---------------------------------------------------------------------------11111111111111111111111112111111111111-------12222222222222222222222222222222122111111322111111111111111111-------------------------------------11111111111----------------------122322222222222222221222222-122211222222-1122222111------------1-111-------1----------------------------------2221----------------------------------------------------------------1----2222222111122121111113211111111111-111-11---111121121---------1111-----------------------------------------------------------11---1---1--1111------1----1---------------22--4214445445544-4434345444454444442333--11-443343443333233451222222--21111111-111---1--------------------------1-----------111111111111-1111-------------111-1111111-1111----------------11--------------1-------------------------------------- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------111-----1-2111-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 483 STR:RPRED 99.4 SQ:SECSTR ccHHHHHHHHHHHHHHcEEccTTcccccHGGccccHHHHHHTTcGGGGcccccccccccccccTTHHHHHHHHHHHHTTccTEEcccccHHHHHHHHHHHHccTTcEEEEEEcTTTTccGGGccccccccccHHHHHcEEEEEcccTcHHHHHHHHHHHcccEcEEEEccccccccccHHHHHHHHHHHTcEEEEEcTTTHHHHHHHTccccGGGTTccEEEEEccccccccccEEEEEEccccccccccHHHTTTTcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTTTcEETTccccccEEcEEEEcccEEEEEGGGGTccHHHHHHHHHHTTEEcEEEccccEEEEEcHHHHTTTccHHHHHHHHHHHHHHHHHTTcHHHHHHHTTcTTccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccTTEEccHHHHHHHHHHHHHHHHcTTccc#cEEccEEE## PSIPRED cccccccHHHHHHHHHHcccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHcccEEEEEccccccccccccccccHHHccccEEEEEcHHccccccccEEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccEEEEEEcccccccHHHHHHHHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccEEEHHHHcccEEEccccccccccEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEcc //