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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55531.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  87/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:478 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   337->392 1bibA PDBj 3e-07 10.7 %
:RPS:SCOP  337->395 1wi9A  a.4.5.47 * 2e-05 6.8 %
:RPS:SCOP  418->462 2ethA1  a.4.5.28 * 2e-04 28.9 %
:HMM:SCOP  317->419 2d1hA1 a.4.5.50 * 3.8e-07 20.4 %
:HMM:SCOP  412->474 1z6rA1 a.4.5.63 * 0.00094 27.0 %
:RPS:PFM   340->463 PF06224 * DUF1006 2e-06 33.9 %
:HMM:PFM   314->468 PF06224 * DUF1006 1e-08 25.5 149/372  
:BLT:SWISS 121->289 RECG_THIFE 1e-12 33.5 %
:BLT:SWISS 421->469 NAGC_SHIFL 5e-04 30.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55531.1 GT:GENE BAD55531.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(712265..713701) GB:FROM 712265 GB:TO 713701 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55531.1 LENGTH 478 SQ:AASEQ MVQTRTRIIDVGGRTVISVEVPKSLHVVGTTSGVYVRRALEVDGSPHCVPFPAHEMLAHEIDRGAVDFAAIPARGATASDLDPAELDRFRRLSSVSMADPILSELSDLEICRALGVWRTADDGVERPTLGAVLLFGTEAAISRHVPNHEVAFQVFDGLSLEINHFTRSPLFKAAEDVFHRVSVWNREEELQFGMLRIALPALPAQVAREAIANALVHRDYTAVGPTRVTISEDAFEVTSPGGFPPGVRLDNLLTISQPRSPILADAFRRAGVVERSGRGVSLMFMSMLRLGREAPDYTQSTERLVRAIVPLGKADIAMARFVAQRENDRGRPMRLFDLQVLHELRAQSKLSATEIAHELNRTLGETRAGLNRMLEEGLVEQRGTGSRRIYHLSAAVYRALDNSPAYVRIRGTESIQHEQMVLRYVESFGPITRGKAAELCLLTPQQATRLLGRMVERGKLIRIGERKATVYDLPNAVG GT:EXON 1|1-478:0| BL:SWS:NREP 2 BL:SWS:REP 121->289|RECG_THIFE|1e-12|33.5|164/652| BL:SWS:REP 421->469|NAGC_SHIFL|5e-04|30.6|49/406| RP:PDB:NREP 1 RP:PDB:REP 337->392|1bibA|3e-07|10.7|56/294| RP:PFM:NREP 1 RP:PFM:REP 340->463|PF06224|2e-06|33.9|118/368|DUF1006| HM:PFM:NREP 1 HM:PFM:REP 314->468|PF06224|1e-08|25.5|149/372|DUF1006| RP:SCP:NREP 2 RP:SCP:REP 337->395|1wi9A|2e-05|6.8|59/72|a.4.5.47| RP:SCP:REP 418->462|2ethA1|2e-04|28.9|45/140|a.4.5.28| HM:SCP:REP 317->419|2d1hA1|3.8e-07|20.4|103/0|a.4.5.50|1/2|"Winged helix" DNA-binding domain| HM:SCP:REP 412->474|1z6rA1|0.00094|27.0|63/0|a.4.5.63|2/2|"Winged helix" DNA-binding domain| OP:NHOMO 129 OP:NHOMOORG 100 OP:PATTERN --------------------------------------11-1--2123113-1-1--1---------- 1----12-1111-1----------------------1---11-11-11------------1-----------1--322-----------221---1------1-----------------------1234---1--11122---1-------1----------1---1---------------11112-------------------------------------------------1------------------1--1------------------------1--------------------------------------11---------------11--------------11---------------1-----------------------------------------------------11---------------------------------------------------------------------------------------------------------------1-------1--21------------1--1---111--2--------------2--1-----1--------------------------22----1----------------------------11---------------------------------------------------1--------------------------------------------------1------------------1-------------2-------------1------------------------------------------------------------------------2-----------111--11--------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 98 STR:RPRED 20.5 SQ:SECSTR ###########################################################################################################################################################################################################################################################################################################################################ccccHHHHHHHHHTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETTTEEEcccccccccHHHccEEEEEEcTTccEEEEccccccccccc################################################# PSIPRED ccccEEEEEEEccEEEEEEEEccccccEEccccEEEEEEcccccccccccccHHHHHHHHHHcccccHHHHccccccHHHccHHHHHHHHHHHHccccccccccccHHHHHHHcccEEEccccEEEEEHHHHEHHcccHHHHHHcccEEEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHccccccccccEEcccccccHHHHHHHHHHHHHcccccccccEEEEEEccEEEEEccccccccccHHHHccccccccHHHHHHHHHcccHHHccccHHHHHHHHHHccccccEEEEEcccEEEEEEcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccccEEEEEcHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccccEEEcccccc //