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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55541.1
DDBJ      :             putative hydrolase
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  117/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:373 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->134 2hdwB PDBj 2e-14 36.9 %
:RPS:PDB   34->156 3dyvA PDBj 2e-11 16.8 %
:RPS:SCOP  19->154 1ve6A2  c.69.1.33 * 8e-13 29.1 %
:HMM:SCOP  26->367 1mpxA2 c.69.1.21 * 1.9e-40 25.0 %
:RPS:PFM   37->135 PF03403 * PAF-AH_p_II 5e-09 37.1 %
:HMM:PFM   36->151 PF01738 * DLH 6.5e-10 26.1 115/217  
:HMM:PFM   115->277 PF00561 * Abhydrolase_1 0.00013 25.3 95/231  
:BLT:SWISS 24->155 YPT2_ECOLX 2e-17 35.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55541.1 GT:GENE BAD55541.1 GT:PRODUCT putative hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 723369..724490 GB:FROM 723369 GB:TO 724490 GB:DIRECTION + GB:PRODUCT putative hydrolase GB:PROTEIN_ID BAD55541.1 LENGTH 373 SQ:AASEQ MATDESIDRGAATAAVQRRDVEFLSDGVPCAAWLYTTPGAPGPRPIVIMGHGLGAVREMRLAAFAERFAANGWSVLVFDYRHLGASGGRPRQLLDIGRQLADWRAAVAFARTLPEVDVDRIALWGTSFGGGHVLQVGSGNPQVAAIVAQCPFTDGPASLISRLRTGPLSAVALMAVGILDTARSWLGSKPILVPMAGTSWMPAFVASPDAIAGASALLPPGTRLSRRSSALLRRLPSVRARLSENIELTIADDREPVTKVGRDSIWGVFRGPGNDFDAANALAARLVLRLPLYRPGRAMARSGVPTLLCVCDNDAAAPAETTKRRARGLAHVRVKTYPCDHFDIYLGTYFEDAVRDQIDFLAEQFADTVPAAT GT:EXON 1|1-373:0| BL:SWS:NREP 1 BL:SWS:REP 24->155|YPT2_ECOLX|2e-17|35.9|128/286| SEG 223->243|rlsrrssallrrlpsvrarls| SEG 278->294|aanalaarlvlrlplyr| BL:PDB:NREP 1 BL:PDB:REP 13->134|2hdwB|2e-14|36.9|122/318| RP:PDB:NREP 1 RP:PDB:REP 34->156|3dyvA|2e-11|16.8|119/238| RP:PFM:NREP 1 RP:PFM:REP 37->135|PF03403|5e-09|37.1|97/216|PAF-AH_p_II| HM:PFM:NREP 2 HM:PFM:REP 36->151|PF01738|6.5e-10|26.1|115/217|DLH| HM:PFM:REP 115->277|PF00561|0.00013|25.3|95/231|Abhydrolase_1| GO:PFM:NREP 2 GO:PFM GO:0003847|"GO:1-alkyl-2-acetylglycerophosphocholine esterase activity"|PF03403|IPR005065| GO:PFM GO:0016042|"GO:lipid catabolic process"|PF03403|IPR005065| RP:SCP:NREP 1 RP:SCP:REP 19->154|1ve6A2|8e-13|29.1|134/260|c.69.1.33| HM:SCP:REP 26->367|1mpxA2|1.9e-40|25.0|272/0|c.69.1.21|1/1|alpha/beta-Hydrolases| OP:NHOMO 205 OP:NHOMOORG 150 OP:PATTERN --------111111---------1------11------------------------------------ --1-2-------1-1-1----3--22-----132123181---------------------1-------11----------11-----111--1------------------------------------------1--------1---1--------------------------------------------------1--11-111-------11------------------------------1------------------------------------------------------------------------------1---------------------------------------------------------1------1--------1----------------1-2--------1-1-------11--------------------------------------------------------1---111-2-1--11----1111------3---2-1----1-1------1-------------------------2-1-----1-----1----------1--1------------------------------11--------1-----------2-----1--------------1--11--11--1-11--1---11----1----------11--------------------1-------1---------------------------1----11-12---------3332212-----21111-----1-1-1-11------------------------1--------1-------------------------------------------------------------- ----------------22--12-4-41-------------------1122-413---1----1---------1-------------------2--------11-------------------------------------------------------------------------22------1---1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 90.9 SQ:SECSTR ccGGGGTTccccccEEEEEEEccTTccEEEEEEccccEEEccccEEEEEEccTTccGGGGGHHHHHHHHHTTcEEEEcccTTcccccTHHHTHcHHHccHHHHHHHHHHHHHHHHTTccEEEEEEETHHHHHHHHHHHHccccEEEEEcccccccccccccHHHcTTccGGGEEEEccTTcGGGGTcccccGGGGcHHTHHHHHHHHHHHHHHccTTTTTT##################cccccccccccccccccHHHHHHHHHHHHHHTTHHHHT#####TGGGHHHHHHHHGGGTTccccccEEEEEETTcccccGGGGTTGGGTcTTcEEEEEcccccHHH##HcHHHHHHHHHHHHHHc######### DISOP:02AL 372-373| PSIPRED ccccccccccccccccEEEEEEEccccEEEEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHccHHHHHHHHHHHHHHHHHccccccccEEEEEEcHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEccccHHHHHHHHccccHHHHHHHHHHHHHccHHHHccccccHHccccHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccEEEEEEccEEEEccccHHHHHHHHHHHHHHHHHHHHccccc //