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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55542.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  8/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:186 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->87 2raeA PDBj 2e-07 40.6 %
:RPS:PDB   17->172 2dg7A PDBj 2e-12 23.2 %
:RPS:SCOP  17->82 1z77A1  a.4.1.9 * 6e-14 25.8 %
:HMM:SCOP  1->87 1t33A1 a.4.1.9 * 2.3e-18 43.0 %
:RPS:PFM   17->63 PF00440 * TetR_N 2e-06 48.9 %
:HMM:PFM   17->63 PF00440 * TetR_N 2.5e-18 44.7 47/47  
:BLT:SWISS 17->83 FADR_BACSU 5e-07 36.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55542.1 GT:GENE BAD55542.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(724533..725093) GB:FROM 724533 GB:TO 725093 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55542.1 LENGTH 186 SQ:AASEQ MPRNRRPRDREEKRAEIVAAARRLFTEQGYDAVPVSRIAQDAGVVSNTLYWYFRDKDAVLTAVLDDVLADSMARYGEVLDNDIVDRLVWVVAELEQVSRLVTTVHARAKESEAVRDWHEQFHALAEGLFRADLAMIGVPADELDAMTSIGVFVVEGLLMHPVDDERKRAVMETLIQSARARAVATR GT:EXON 1|1-186:0| BL:SWS:NREP 1 BL:SWS:REP 17->83|FADR_BACSU|5e-07|36.5|63/194| SEG 3->16|rnrrprdreekrae| BL:PDB:NREP 1 BL:PDB:REP 24->87|2raeA|2e-07|40.6|64/193| RP:PDB:NREP 1 RP:PDB:REP 17->172|2dg7A|2e-12|23.2|155/185| RP:PFM:NREP 1 RP:PFM:REP 17->63|PF00440|2e-06|48.9|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 17->63|PF00440|2.5e-18|44.7|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 17->82|1z77A1|6e-14|25.8|66/75|a.4.1.9| HM:SCP:REP 1->87|1t33A1|2.3e-18|43.0|86/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 8 OP:NHOMOORG 8 OP:PATTERN -------------------------------------------------------------------- -------------------------1----------1--1-111--------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 170 STR:RPRED 91.4 SQ:SECSTR ################HHHHHHHHHHHccGGGccHHHHHHHTTccHHHHHHHcccTTGGGTTTcHcccHHHHHHHHHTccTHHHHHHHHHTTTTTTccTTHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHHHHHHHHHccccHHHH DISOP:02AL 1-16| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc //