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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55546.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  40/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.37.1
:286 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->72 2di3B PDBj 6e-06 32.8 %
:BLT:PDB   94->202 1u8aA PDBj 6e-06 34.7 %
:RPS:PDB   9->72 3by6D PDBj 2e-11 25.0 %
:RPS:PDB   93->266 2ax4B PDBj 3e-05 12.7 %
:RPS:SCOP  11->72 1e2xA1  a.4.5.6 * 4e-13 22.6 %
:RPS:SCOP  93->277 1knqA  c.37.1.17 * 4e-08 16.3 %
:HMM:SCOP  4->100 1v4rA1 a.4.5.6 * 8.8e-17 31.5 %
:HMM:SCOP  93->282 1i2dA3 c.37.1.15 * 3.5e-17 20.6 %
:RPS:PFM   15->65 PF00392 * GntR 9e-05 45.1 %
:RPS:PFM   104->185 PF01121 * CoaE 7e-05 37.0 %
:HMM:PFM   14->73 PF00392 * GntR 1.8e-17 38.3 60/64  
:HMM:PFM   92->128 PF06414 * Zeta_toxin 1.9e-07 37.8 37/201  
:BLT:SWISS 2->72 YDEL_BACSU 3e-10 38.0 %
:BLT:SWISS 90->271 COAE_SYNY3 5e-07 30.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55546.1 GT:GENE BAD55546.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(727365..728225) GB:FROM 727365 GB:TO 728225 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55546.1 LENGTH 286 SQ:AASEQ MPESKRHHTMPAHLRIAQAIRNDIESGRLRDGQRLPSTRALAEEWQASQLTITKAMEQLAADGYVASHDRSGRIVTTPTSVSLSLTHPVRPIRPRAVYVGGYPGSGKSEFARTLARETGWAILDKDTIARPIIEPALEDLGSTIDDRESDVYLNRIRPREYEALAAVIQDNLEVGNSAVASAPYLREFADQTWLDNVIARAESQSADVTFVWVRCTLETMLMYLRRRGAARDAWKLAHWDRYSSGLDLSFRPSVAHVVIDNDPDSPPLRKQAQALIESFRRETTER GT:EXON 1|1-286:0| BL:SWS:NREP 2 BL:SWS:REP 2->72|YDEL_BACSU|3e-10|38.0|71/463| BL:SWS:REP 90->271|COAE_SYNY3|5e-07|30.7|176/201| SEG 75->86|vttptsvslslt| BL:PDB:NREP 2 BL:PDB:REP 9->72|2di3B|6e-06|32.8|64/230| BL:PDB:REP 94->202|1u8aA|6e-06|34.7|101/163| RP:PDB:NREP 2 RP:PDB:REP 9->72|3by6D|2e-11|25.0|64/121| RP:PDB:REP 93->266|2ax4B|3e-05|12.7|158/195| RP:PFM:NREP 2 RP:PFM:REP 15->65|PF00392|9e-05|45.1|51/64|GntR| RP:PFM:REP 104->185|PF01121|7e-05|37.0|81/179|CoaE| HM:PFM:NREP 2 HM:PFM:REP 14->73|PF00392|1.8e-17|38.3|60/64|GntR| HM:PFM:REP 92->128|PF06414|1.9e-07|37.8|37/201|Zeta_toxin| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 11->72|1e2xA1|4e-13|22.6|62/73|a.4.5.6| RP:SCP:REP 93->277|1knqA|4e-08|16.3|166/171|c.37.1.17| HM:SCP:REP 4->100|1v4rA1|8.8e-17|31.5|89/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 93->282|1i2dA3|3.5e-17|20.6|175/0|c.37.1.15|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 42 OP:NHOMOORG 40 OP:PATTERN -------------------------------------------------------------------- ----1-----1-------------------------1----2-----------1-------------1--1---------------------------------------------------------------------------------------------1-------------------------------------------------------------------2---------------------------------------------------------------------------------------------1------------------------------------------------1-----------------1---------------------------------------------------------------------------------------------------------------11111111---11111111111111111-1---------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 268 STR:RPRED 93.7 SQ:SECSTR HccccccccccHHHHHHHHHHHHHHTTcccTTcEEccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEE##############EEEcccccccEEccTTccccccccTTcccccccTTccccccHHHHcccTTHHHHHHHHHHHHHHHHHHHTcGGGcHHHHHHHHHHHHHccHTTHHHHHHHHHHHHHHHHHHHTTccGGGcccccEEEEEEcccHHHHHHEEEccTTccccccTTTccccTccccccccEEEETTTccHHHHHHTTHHHHHHHTT#### DISOP:02AL 1-7, 81-89, 282-286| PSIPRED cccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccEEEEcccHHHHHcccHHHHHHHHcccccccEEEEEEEccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccc //