[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55556.1
DDBJ      :             putative phage integrase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  352/915 : Eukaryota  1/199 : Viruses  6/175   --->[See Alignment]
d.163.1
:403 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   85->187 2kkpA PDBj 1e-04 24.3 %
:BLT:PDB   214->347 1a0pA PDBj 2e-05 33.3 %
:RPS:PDB   94->355 3c28B PDBj 2e-24 15.4 %
:RPS:SCOP  86->355 1p7dA  d.163.1.1 * 2e-15 15.9 %
:HMM:SCOP  191->371 1a0pA2 d.163.1.1 * 1e-30 32.1 %
:RPS:PFM   212->355 PF00589 * Phage_integrase 2e-14 39.4 %
:HMM:PFM   192->364 PF00589 * Phage_integrase 1.1e-27 33.1 160/173  
:BLT:SWISS 141->355 XERC_GEOLS 4e-14 28.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55556.1 GT:GENE BAD55556.1 GT:PRODUCT putative phage integrase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 734002..735213 GB:FROM 734002 GB:TO 735213 GB:DIRECTION + GB:PRODUCT putative phage integrase GB:PROTEIN_ID BAD55556.1 LENGTH 403 SQ:AASEQ MAVRRNRRAGVEDLWTKEERCPDGTVHRVPSKLHGKGKRWRARYVDGTGRENTKRFARKVDAQSWLDAQTAAVVSGVHAPPSAGRVTVDVIATAWLDNHPSWEESTRSRYRSVVDAHIRPRWGNVRVADLAHEEIQQWVIEQVSGGAAGGTVRKNLGVLSQICDYAVITRRIAVNPCSTVNRPKQRLAKRRYLSGMEVERLAEQAGGNWLTVMVLAYCGLRFAELAGLQVSSVSLQRRRLQIERTITEVDGVLVTKAPKDHQRRSVPFPAFLAEPLERHLAGRRPDSEVFTSSTGAILRVRNMRRAWWDGAAKAAGLEGLTPHEMRHTAASLAVSHGASVLALQRMLGHDKPSTTLDFYADLFDDDLDEVACKLDAARTGFAAAYSLRTASDPATASQGRKTA GT:EXON 1|1-403:0| BL:SWS:NREP 1 BL:SWS:REP 141->355|XERC_GEOLS|4e-14|28.9|201/317| SEG 356->368|ldfyadlfdddld| BL:PDB:NREP 2 BL:PDB:REP 85->187|2kkpA|1e-04|24.3|103/117| BL:PDB:REP 214->347|1a0pA|2e-05|33.3|120/271| RP:PDB:NREP 1 RP:PDB:REP 94->355|3c28B|2e-24|15.4|254/315| RP:PFM:NREP 1 RP:PFM:REP 212->355|PF00589|2e-14|39.4|132/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 192->364|PF00589|1.1e-27|33.1|160/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 86->355|1p7dA|2e-15|15.9|258/280|d.163.1.1| HM:SCP:REP 191->371|1a0pA2|1e-30|32.1|165/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 484 OP:NHOMOORG 369 OP:PATTERN --------1111-1--1----------------------------------------111--1----- 113-1-21111-2--3211-13--11232231323223-2-4261------13---1---216-21134--22223--22123---11111---11--------1-----1------------------------------122-1-------------------------------------2------1-11111113---21-111--3311-111-1111-1---1--1----------------11113--1--1----------2-21---1--11-----------------------1---11------------4----1---11----2---------2---22112224-31231-2-21--1121---------------------------------3-1------1-------------------2---------11111111--------------------------------------11-------1-11---11111----111121-1-1111--11--2111-1111-1--12----11------11-11-212--1--------1111-1221-11-1-----------------------1------1111---1-2-111111-12222-1-1221--11-11-------1-1---1111111121-1-11111111111111111111---111111111111111111-1111111---11111111111-------------1-1--1111-1-----121--1-1---11111111111----1--1111-111111112---1-----111111-----------------------------------------------------------11----1---1-1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------1-----1--1--------------------------------1--1---------------1----------------- STR:NPRED 274 STR:RPRED 68.0 SQ:SECSTR #################################################################################ccccccHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccGGGEEEcTTccEEEEEccccccEccETTEcccccEEEEccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccTcccTTHHHHHHHHHHHHTTccHHHHHHHTTccccHHH################################################ DISOP:02AL 1-9, 384-403| PSIPRED ccccccccccccccEEEEEccccccEEEEcccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEEEEEccccEEEEcccccccEEEEEccHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc //