[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55569.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  48/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:426 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->145 3g7rB PDBj 5e-10 30.9 %
:BLT:PDB   249->316 2qibA PDBj 1e-08 38.2 %
:RPS:PDB   44->126 2dt5A PDBj 5e-13 2.4 %
:RPS:PDB   252->426 3b81A PDBj 5e-15 16.5 %
:RPS:SCOP  50->110 1z77A1  a.4.1.9 * 4e-13 27.9 %
:RPS:SCOP  251->320 1z77A1  a.4.1.9 * 9e-14 27.1 %
:HMM:SCOP  43->126 1t33A1 a.4.1.9 * 1.8e-18 37.3 %
:HMM:SCOP  121->230 1vi0A2 a.121.1.1 * 0.00024 24.5 %
:HMM:SCOP  240->328 1t33A1 a.4.1.9 * 1.4e-16 31.8 %
:RPS:PFM   54->99 PF00440 * TetR_N 2e-06 52.2 %
:RPS:PFM   256->301 PF00440 * TetR_N 3e-06 41.3 %
:HMM:PFM   54->99 PF00440 * TetR_N 1.4e-18 52.2 46/47  
:HMM:PFM   256->302 PF00440 * TetR_N 4.5e-16 34.0 47/47  
:BLT:SWISS 49->102 YERO_BACSU 6e-08 40.7 %
:BLT:SWISS 233->298 TCMR_STRGA 5e-07 31.8 %
:REPEAT 2|40->123|241->326
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55569.1 GT:GENE BAD55569.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 785234..786514 GB:FROM 785234 GB:TO 786514 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55569.1 LENGTH 426 SQ:AASEQ MVAEHGEVDLAAARPDSGPTAAAAPAGNGSGATANRSGGEAGVRRRPKDRKAQIVRAAARAFSERGYYPVGVDEIAAEVGISGPALYRHFANKYALLVAAAEEGARHLLQVAQAADDPALDPEPRLDAVIKAISEHTIDIRREAGLYRWERRYLEREDRLRIRRIYDELNDTIAAPIARLRPGADPADLRMLSAAVMSAVASIAAHRTALSGARLLPLLRDMCWAILRTELPPAPVDTEDEPAPRGLPVTSKREQLLTEAIRIFGRQGYHEASIEEIGAAVGINASSVYRYFSSKADLLAAAFHRTGDRVSVAITEALAEATSRPDAVRRIAARQAKLTFAMPEIMPVYYAEFSNLPQAEQHKLRAIQRQNVLEWANLLDGDPIEARFRVHAAIGQVIDVGRLIRFDSRPAQLARVTALMEAVLLG GT:EXON 1|1-426:0| BL:SWS:NREP 2 BL:SWS:REP 49->102|YERO_BACSU|6e-08|40.7|54/289| BL:SWS:REP 233->298|TCMR_STRGA|5e-07|31.8|66/226| NREPEAT 1 REPEAT 2|40->123|241->326| SEG 17->35|sgptaaaapagngsgatan| SEG 146->169|lyrwerryleredrlrirriydel| SEG 193->205|saavmsavasiaa| BL:PDB:NREP 2 BL:PDB:REP 45->145|3g7rB|5e-10|30.9|97/199| BL:PDB:REP 249->316|2qibA|1e-08|38.2|68/217| RP:PDB:NREP 2 RP:PDB:REP 44->126|2dt5A|5e-13|2.4|83/210| RP:PDB:REP 252->426|3b81A|5e-15|16.5|170/181| RP:PFM:NREP 2 RP:PFM:REP 54->99|PF00440|2e-06|52.2|46/47|TetR_N| RP:PFM:REP 256->301|PF00440|3e-06|41.3|46/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 54->99|PF00440|1.4e-18|52.2|46/47|TetR_N| HM:PFM:REP 256->302|PF00440|4.5e-16|34.0|47/47|TetR_N| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 50->110|1z77A1|4e-13|27.9|61/75|a.4.1.9| RP:SCP:REP 251->320|1z77A1|9e-14|27.1|70/75|a.4.1.9| HM:SCP:REP 43->126|1t33A1|1.8e-18|37.3|83/0|a.4.1.9|1/2|Homeodomain-like| HM:SCP:REP 121->230|1vi0A2|0.00024|24.5|110/0|a.121.1.1|1/2|Tetracyclin repressor-like, C-terminal domain| HM:SCP:REP 240->328|1t33A1|1.4e-16|31.8|88/0|a.4.1.9|2/2|Homeodomain-like| OP:NHOMO 113 OP:NHOMOORG 48 OP:PATTERN -------------------------------------------------------------------- ----2------1---3322-26--3422222355554533-21----------112-2--221-234121-------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------1------------------------------------------------------------------------------------1--------------------------------------1----2-------------------1-----------1-----------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 374 STR:RPRED 87.8 SQ:SECSTR ##########################################cccHHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTTTcEEHHHHHHHHHHHHTTTccEEEEEHHHHHHHHccHHHHccTTHHHHccHHHHTTcccHHHHHHHHH#####HHHTTccccccHHHHHHHHHHHHHHHTHHHHHHccccccHHHHHHHHHHHHHHHHHHccc#####HHHHHHHTccHccHHHHHHHHHHHHHHHHccTTccHHHHHHHHTccHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHccTTccHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHcccHHHHHHHHHHHHHTTTcHHHHTccGGGHHHHHHHHHHHHHHHTc DISOP:02AL 1-5, 7-53| PSIPRED ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcc //