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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55594.1
DDBJ      :             putative RNA pseudouridylate synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  770/915 : Eukaryota  124/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:309 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   91->287 2i82C PDBj 5e-14 35.0 %
:RPS:PDB   79->304 2apoA PDBj 7e-18 14.0 %
:RPS:SCOP  93->294 1v9kA  d.265.1.3 * 2e-33 25.2 %
:HMM:SCOP  82->295 1przA_ d.265.1.3 * 2.3e-48 34.3 %
:RPS:PFM   100->246 PF00849 * PseudoU_synth_2 4e-04 33.8 %
:HMM:PFM   100->245 PF00849 * PseudoU_synth_2 1.2e-21 27.4 146/164  
:BLT:SWISS 91->288 RLUA_PASMU 3e-22 39.2 %
:PROS 138->152|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55594.1 GT:GENE BAD55594.1 GT:PRODUCT putative RNA pseudouridylate synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(807653..808582) GB:FROM 807653 GB:TO 808582 GB:DIRECTION - GB:PRODUCT putative RNA pseudouridylate synthase GB:PROTEIN_ID BAD55594.1 LENGTH 309 SQ:AASEQ MRRRQQPPLPKRHGLDPARLRLPEAGEWATIRDHLVHRLPRVAPERIDELLRAGAIVDLDGPIAPDAPYVPGGAVWFHRDLPDEVEVPFDLTVVHRDETVLVVDKPHFLATIPRGQHIRQTALVRLREQLGLPDLVPAHRLDRVTAGLILFVVDPARRGAYQTMFHRRTVRKQYEAIAPFDPELALPRVVRSRIVKEKHVLAAREVEGEPNAETLVELLEHRDGLGRYRLTPHTGRTHQLRLHMNSLGVPILGDDFYPVLTDKPVHEFTRPLQLLAAVLEFTDPVTGEPRRFETTRSLQAWTDYPGWAG GT:EXON 1|1-309:0| BL:SWS:NREP 1 BL:SWS:REP 91->288|RLUA_PASMU|3e-22|39.2|189/219| PROS 138->152|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 91->287|2i82C|5e-14|35.0|183/208| RP:PDB:NREP 1 RP:PDB:REP 79->304|2apoA|7e-18|14.0|207/304| RP:PFM:NREP 1 RP:PFM:REP 100->246|PF00849|4e-04|33.8|142/149|PseudoU_synth_2| HM:PFM:NREP 1 HM:PFM:REP 100->245|PF00849|1.2e-21|27.4|146/164|PseudoU_synth_2| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 1 RP:SCP:REP 93->294|1v9kA|2e-33|25.2|202/227|d.265.1.3| HM:SCP:REP 82->295|1przA_|2.3e-48|34.3|213/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 1827 OP:NHOMOORG 894 OP:PATTERN -------------------------------------------------------------------- 1-11-32111121111112-31--1111111121112322------211--1111211-----12-2111-11111111-1--112214444-3-21----112-21214-1111112-21111211111111111122-1111111122222112222121132-21121-2-----3----33311121332-3333222132332211223223223331113223333423323232323333223332-133443412332222342-22-3333332222322333333333332222222222222221222222231-12----------311112111-211111-111131-11-11113-112-21333--1112-211113-2-11----------1-32132332-11-23311212221212323231111132111111111111-222-221-111121--1111111111111---1-3323311111222322111111111111111122-1-2131113322432332113331124334444441222534-2121611111111112--1113223162232--1-1-1--111111111112-3111454433426544656688866666-86687--1-212------22323323332323233-3333333323323333332333234342212222222222222323333232-322222222122--2322222111132313444335354453324444344423334223222233-22232221--------3777544444556443232221332-1-1--231111--11111111111-1-11-1-1-11-111----1111111-222122212- -----1------222111----11-1--------------------11--1111--1--1-12122211-23212221131222-211-12-1121----11-211-141422212--11112111111352-1121-1-2111-11-11121111-11--1-211-3113--11---14214--1--111143211-3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 91.3 SQ:SECSTR ######################ccccEEHHHHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETccTTccccGGGccHHHHHHTEEEEEEEcccccHHHHHHHHHHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGEEGGGGGGGGGTTcccEEEEEEEEEcccccHHHHHHHHHHHcEEEEcccccccccEEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHTTccEEEEEEEEEEETTEEGGGcccHHHHHHHHHHHHTccccHHHHHHEEEGGG##### DISOP:02AL 1-20| PSIPRED ccccccccccccccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHHHHcccEEEccEEEccccEEEcccEEEEEcccccccccccccEEEEEccEEEEEEccccEEEEcccccccHHHHHHHHHHcccccEEEEEcccccccEEEEEEccHHHHHHHHHHHHcccEEEEEEEEEccccccccccEEccccccccccEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHccccEEccccccccccccccccccHHHHEEEEEEEEccccccEEEEEEccccHHHHHcccccc //