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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55596.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  893/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:616 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   370->598 2hydA PDBj 4e-44 42.8 %
:RPS:PDB   364->585 3b5jA PDBj 4e-46 37.4 %
:RPS:SCOP  37->254 2hydA2  f.37.1.1 * 5e-10 10.1 %
:RPS:SCOP  364->596 1q3hA  c.37.1.12 * 6e-35 19.7 %
:HMM:SCOP  17->346 1pf4A2 f.37.1.1 * 1.2e-40 24.1 %
:HMM:SCOP  365->584 1pf4A1 c.37.1.12 * 4.4e-60 39.1 %
:RPS:PFM   118->254 PF00664 * ABC_membrane 1e-05 26.5 %
:RPS:PFM   501->529 PF00005 * ABC_tran 2e-05 58.6 %
:HMM:PFM   405->529 PF00005 * ABC_tran 8.6e-20 32.7 113/118  
:HMM:PFM   80->315 PF00664 * ABC_membrane 8.4e-16 20.4 230/275  
:HMM:PFM   500->569 PF02463 * SMC_N 0.00071 28.6 70/220  
:HMM:PFM   379->422 PF03193 * DUF258 6.4e-06 32.6 43/161  
:BLT:SWISS 106->308,365->616 Y1383_MYCBO 8e-68 57.6 %
:PROS 501->515|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55596.1 GT:GENE BAD55596.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 809229..811079 GB:FROM 809229 GB:TO 811079 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD55596.1 LENGTH 616 SQ:AASEQ MTVEATPLAAGEAGNTPPKQVRKAEKQREAAARKEILAPVRTPLLVASVLMGLASVCLVVPFLLIVEVCRELLAEPVDTDRVWRLLATAVAVLVVRALLQAVALTWSHLVDGGFQLTLRRALAEKLSRVPLGWFGERTSSEVKKYLQDDVEALHYLVAHARLEFVGAVTVPLVTLIYLCTVDWRLTLVLLLPLVAYAVLYGRIVDRDGRDRIVVYNRSEQRTKQATIEFVDGIQVVRAFGRAGKAHSDFQAAVEHQARSVDRMKTPIIGVQSASDIVVTPVFVMLVVVVAGLAAVGLDWVQPLDVLPFLLIGVGLGSSLLGLGYGAQALRAGGEAALRLHALRSEPELAEGAPSAAAGSDPAGLVRFSGVGFGYRADRQVLRDIDLELAPGTITALVGPSGSGKSTLAKLLPRFYDVDTGSITIGGRDIRDFPSEELYRTVGFVFQDVRLIRGSIADNLRLARPDADRAAMEHAARAAQIHDRIMALPRGYDSEIGVDATLSGGEAQRLSIARALLADTPVLVLDEATAFADPESEAAVQDALAVLVAGRTVLVIAHRLHTITGVDRIVVLDNGTLVEQGDHESLRAAGGMYQRLWEINEAALGDLALVETKEGVR GT:EXON 1|1-616:0| BL:SWS:NREP 1 BL:SWS:REP 106->308,365->616|Y1383_MYCBO|8e-68|57.6|449/859| PROS 501->515|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 5 TM:REGION 50->72| TM:REGION 85->107| TM:REGION 172->194| TM:REGION 274->296| TM:REGION 303->325| SEG 22->35|rkaekqreaaarke| SEG 81->104|rvwrllatavavlvvrallqaval| SEG 185->214|ltlvlllplvayavlygrivdrdgrdrivv| SEG 277->300|vvtpvfvmlvvvvaglaavgldwv| SEG 309->363|lligvglgssllglgygaqalraggeaalrlhalrsepelaegapsaaagsdpag| SEG 456->478|adnlrlarpdadraamehaaraa| SEG 537->548|aavqdalavlva| BL:PDB:NREP 1 BL:PDB:REP 370->598|2hydA|4e-44|42.8|229/578| RP:PDB:NREP 1 RP:PDB:REP 364->585|3b5jA|4e-46|37.4|222/243| RP:PFM:NREP 2 RP:PFM:REP 118->254|PF00664|1e-05|26.5|132/274|ABC_membrane| RP:PFM:REP 501->529|PF00005|2e-05|58.6|29/123|ABC_tran| HM:PFM:NREP 4 HM:PFM:REP 405->529|PF00005|8.6e-20|32.7|113/118|ABC_tran| HM:PFM:REP 80->315|PF00664|8.4e-16|20.4|230/275|ABC_membrane| HM:PFM:REP 500->569|PF02463|0.00071|28.6|70/220|SMC_N| HM:PFM:REP 379->422|PF03193|6.4e-06|32.6|43/161|DUF258| GO:PFM:NREP 7 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 37->254|2hydA2|5e-10|10.1|217/323|f.37.1.1| RP:SCP:REP 364->596|1q3hA|6e-35|19.7|218/265|c.37.1.12| HM:SCP:REP 17->346|1pf4A2|1.2e-40|24.1|311/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 365->584|1pf4A1|4.4e-60|39.1|220/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 13176 OP:NHOMOORG 1142 OP:PATTERN ---1-1-13221222141121-1171167433312231-----2433921653143422-32--4--- 84E4NBB7CCC6757AB77-7922CG777778CEEEHLHM3F9TGGH9F965GEI5BB22FJGBN4DRQXA7888A97D5ZH6222--8955-5359--53A855B5D8A111111121122222B879FC8CBAA788CD433I3JDFJBB966AAB787B6A99FOTWA4C765759566556944D83B5AEEGEGHJH8GHIHGJFDHHEGGIN7BADGDELLLLLJMV99A9A98788999888A95DPA79NPA7D6EFF66ONB749AFCBCDFHMEBDIIIFIGFDCFHCGF9BA9AA9ABAA9AFGHEECGGHEJCEDJIJIIMKJ6MAGELL8FEEaCAHOGHE4-ZYH5239445CCBE87793677765845672NMKD9B6JBEBA9ABAABA8BK-HIQGFFIJHO93WOONMQNWVRNOJC579BBOFHGGDA8BBBBBBBBD9B6AA9O222222223346446746664655632521448348DC8EGHHGIHABCCBDDACFFFE9EFCCEBA823557DACC9CBEDEG58C5A48C63344634799D95A6A364884A6337246458A9593374CD4E623342222232133333333514477BB8755A57698998887A7766888A788--579B4221222FBBD7AC677A69B966-76666676887A7666669CHGEHGKB9978888888888889C656666583HHJIJKIGIHJH1132354338AB941D8C8777744766555573445434436AFDFFDJJBCAGFED7EGF4444454343678FAAAA9DCAHJ9AA677688A55552274775544111-1---m-D22236-522-521---2373-411267A549AAA9272 4444OJB-I835GGGDDLDIMPKVNWKEDBCCCNPMELLJIIHABBMKMSSNWUFHOHIFEFE9A6672973A8D662677777A959-GT9DLHEBBACA9CIJB6DqX*PWPaWgIEFFGOGWVEkE**X1eMhEJFBTFKlMEHIHBPD9*GLEMRGX*IaKLDfNP*achV7B99*677FDYWX*GdlCGkTbbI ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-6, 8-29, 346-360, 599-616| PSIPRED ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccEEccccEEEccccEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccEEccccEEcHHHHHHHHHHHHHHHcccEEEEcccHHHccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHcccccHHHHHHccccc //