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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55597.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  908/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:578 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   322->563 2hydA PDBj 6e-54 43.0 %
:RPS:PDB   328->553 3b5jA PDBj 5e-56 40.7 %
:RPS:SCOP  72->237 2hydA2  f.37.1.1 * 4e-16 15.7 %
:RPS:SCOP  317->577 1q3hA  c.37.1.12 * 7e-43 24.4 %
:HMM:SCOP  5->314 1pf4A2 f.37.1.1 * 2.6e-48 26.0 %
:HMM:SCOP  309->550 1pf4A1 c.37.1.12 * 1.7e-70 38.0 %
:RPS:PFM   72->232 PF00664 * ABC_membrane 9e-12 24.8 %
:RPS:PFM   359->387 PF12128 * DUF3584 2e-04 51.7 %
:RPS:PFM   467->495 PF00005 * ABC_tran 1e-07 69.0 %
:RPS:PFM   467->534 PF02463 * SMC_N 1e-06 36.8 %
:HMM:PFM   25->284 PF00664 * ABC_membrane 1.9e-23 16.9 260/275  
:HMM:PFM   370->495 PF00005 * ABC_tran 6.5e-23 33.6 113/118  
:HMM:PFM   350->383 PF03193 * DUF258 6.9e-05 27.3 33/161  
:BLT:SWISS 1->573 Y1384_MYCBO 3e-64 32.3 %
:PROS 467->481|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55597.1 GT:GENE BAD55597.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 811076..812812 GB:FROM 811076 GB:TO 812812 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD55597.1 LENGTH 578 SQ:AASEQ MIRTVLGLVPAEFRHLTPKMFAAIVAQALCQALAYLLLVPVLEALFGDDLGRAWLWALGMLAAVAGVVVFGYLSAAIGLRIGIGMQRGLQTRIGDHLNALPLGWFETRDAGPLSRLIVENVREVQGLIAYLLAKVLTGVIVPLGVAVGMLFVDWRISLAMLLAAPVLYAVNGFANRAYTGADRRMHEAAAEADSRVVEFAQAQPVLRAFGAVGASNRALDAALSGQRSAGRKMIAASVPGLILFALFVQAVFLVLVYVAVGRVTGGAVSAAAAIALIAVSSRFIEPLNQAAQLGNALRSAAAAAERIGDLLAQPVLPEATAPVTPGSPSVVFDNVSFGYRPGEPVLSEITFSVPAGTTTAIVGPSGAGKTTLLRLAARFYDVDSGRVAVGEHDVRDQPSATLLDQLSLVFQNVYLFDRSVADNIRIGKPDATDEEVRRAAEAARVDEIVERLPEGYDTRVGEGGATLSGGERQRVSIARALLKDAPIVLLDEATSALDPHSEAAVVRGIHELTREATVIVVAHRLATIAHADQILFLEGGRIVERGTHEELLALDGRYARFWNERSRAAGWRLEPAAV GT:EXON 1|1-578:0| BL:SWS:NREP 1 BL:SWS:REP 1->573|Y1384_MYCBO|3e-64|32.3|573/579| PROS 467->481|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 6 TM:REGION 28->50| TM:REGION 59->81| TM:REGION 119->141| TM:REGION 153->175| TM:REGION 234->256| TM:REGION 266->288| SEG 26->38|aqalcqalaylll| SEG 50->71|lgrawlwalgmlaavagvvvfg| SEG 241->281|lilfalfvqavflvlvyvavgrvtggavsaaaaialiavss| SEG 290->304|aaqlgnalrsaaaaa| SEG 430->451|datdeevrraaeaarvdeiver| BL:PDB:NREP 1 BL:PDB:REP 322->563|2hydA|6e-54|43.0|242/578| RP:PDB:NREP 1 RP:PDB:REP 328->553|3b5jA|5e-56|40.7|226/243| RP:PFM:NREP 4 RP:PFM:REP 72->232|PF00664|9e-12|24.8|161/274|ABC_membrane| RP:PFM:REP 359->387|PF12128|2e-04|51.7|29/1179|DUF3584| RP:PFM:REP 467->495|PF00005|1e-07|69.0|29/123|ABC_tran| RP:PFM:REP 467->534|PF02463|1e-06|36.8|68/536|SMC_N| HM:PFM:NREP 3 HM:PFM:REP 25->284|PF00664|1.9e-23|16.9|260/275|ABC_membrane| HM:PFM:REP 370->495|PF00005|6.5e-23|33.6|113/118|ABC_tran| HM:PFM:REP 350->383|PF03193|6.9e-05|27.3|33/161|DUF258| GO:PFM:NREP 9 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 2 RP:SCP:REP 72->237|2hydA2|4e-16|15.7|166/323|f.37.1.1| RP:SCP:REP 317->577|1q3hA|7e-43|24.4|246/265|c.37.1.12| HM:SCP:REP 5->314|1pf4A2|2.6e-48|26.0|304/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 309->550|1pf4A1|1.7e-70|38.0|242/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 23096 OP:NHOMOORG 1173 OP:PATTERN 3311652356644352A2843588OBCHEAI8928233547538A9AI46KC8478565353316-12 BCH6qLKMSSRFHBC9BCB-BM33FdCBCCCAJJJJSgadAQGWVXXOUIGBVXaCDU55SZPLhHYpjqIKIGGPJHN9nNK43544CD881935A--55A967I5GCD122222244533333FCBDKDBJFFBFGGOS666U7RKMRFFHEGEEG9AAEAGFCOahkE8G88797B8977DHJ66GC6JFMMMPNPPVVJTPSQRSXVMMVQSUXEHMSUNLTTTTVTcqNHIHHHGFHHHHHGFHFEDKcOILghMISKTVTFFehLJEJPMNLNPSTaUQVVabVZXVVSWYSWUJKKJJKLKMLLJKaUSPPNTTUNOTVSUSUSTYUSEWLLURRFNMMlHHNQVRJD5noKE8DA76EIIMOCGIF49DGGDCFBAED9xjsIGCLSHXLSTRUUTVMQS*-QRkPNaLdXvA5***oqtt*****qV7CBTW*abZaZWYCCCCCCCCPHMAGMGY33443333545755785777676674363688B55JbXJYWbbbeVMPQQNTTajVTVUFSXRmORUH56HIIOMKIFVKVTeyEMJ8C7CLD897AC89B89GJDCER9FGMKCIOKIK7HFFDFFF7IACCCPSBQ655789888965667766666A445A9WUJ9F9C6ABKEEFIDACGCABDCIGKDDF3-98ED5222222YOlYFWVNOOPNSRSKK-NMNMPLRKQOOSPKLMKKQckiehVVMOOKNLNNONNKMNMNMZKIMOONMG4ccddhgdacege11C46865689B984PNWHFFEMGCFEEEB9BH9CEDC8FBAEPFSUTTYhZkPUZQTFkdg7776787677IKJTMMMMLYULWYCED9BA9BBD887823DDAA665521122222q1Q6353A-566287476585A6343349HN68AJBHB3A6 6755PLG-XF85OQNGHOILPSRbScOIIDFEFQROGNMKLJICCCSNPZWVcZKJPJLGGHGDB7892F95DBEBB2BD7998FC69-TgDHNQOFFFKDBIOKE6E*e*UdRiYnIHILLPHadItI**b1lRuILFGYIN*WFIJIDSGD*IQLOcJe*IlNFNkMR*nfqY9FED*698GDccb*ImuEIwdkoU ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 313-327, 567-578| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEEcccccEEccccEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHcHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccHHcccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHcccc //