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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55603.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  41/915 : Eukaryota  59/199 : Viruses  0/175   --->[See Alignment]
c.69.1
:456 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   183->351 3f98A PDBj 1e-15 35.1 %
:RPS:PDB   203->320 2b4kA PDBj 3e-08 9.5 %
:RPS:SCOP  201->333 1ufoA  c.69.1.27 * 3e-07 21.0 %
:HMM:SCOP  105->415 1jfrA_ c.69.1.16 * 1.9e-23 25.5 %
:RPS:PFM   186->405 PF03403 * PAF-AH_p_II 2e-23 37.7 %
:HMM:PFM   110->246 PF03403 * PAF-AH_p_II 8.7e-16 30.7 127/381  
:HMM:PFM   291->434 PF03403 * PAF-AH_p_II 1.8e-10 27.5 138/381  
:HMM:PFM   201->328 PF01738 * DLH 5e-07 25.7 109/217  
:BLT:SWISS 142->355 PAFA_MOUSE 2e-16 35.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55603.1 GT:GENE BAD55603.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(817278..818648) GB:FROM 817278 GB:TO 818648 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55603.1 LENGTH 456 SQ:AASEQ MRTMSTLDVILVVLTLIFAALAVAAPRIGVRALPVAVPLLLAGWLGQWLLEGFYWQFLPALLLAVAAAVLAVRQGIRPRTGVIAVSARVVVGVWAVVAVLALAPAPVPELPAPTGPYAVGSQIYRWVDEQRAEPTAPGERRNVVVQAWYPADQRSGRRYVYIDGYDRLPGSVSGIPGALMRGYGRIDTHATTDVPVSGARERWPVVLFSPGYGAPRAFYTGLVADLASRGFVVLAVDHPFESAVTELADGRLATTVATGTDDDLADEQRTRAADLRYVLDQLAGPDLLGPLADRIDTGHIAAVGHSFGGAAALAVLAEDPRVAAAANIDGTLYGDLPGRTLTRPVLLVESDRAETGHSDRYLDGNGALLARLAAPGHRYTVTGANHFGFTDVPFFLVPPAQAVLGRFVGGPRDPADTHRTTVALLDAFLREPLGDPAVDIAATAAGLAGVTGGRVR GT:EXON 1|1-456:0| BL:SWS:NREP 1 BL:SWS:REP 142->355|PAFA_MOUSE|2e-16|35.8|212/440| TM:NTM 3 TM:REGION 14->36| TM:REGION 55->77| TM:REGION 83->105| SEG 6->17|tldvilvvltli| SEG 29->50|gvralpvavplllagwlgqwll| SEG 60->72|alllavaaavlav| SEG 82->113|viavsarvvvgvwavvavlalapapvpelpap| SEG 441->455|aataaglagvtggrv| BL:PDB:NREP 1 BL:PDB:REP 183->351|3f98A|1e-15|35.1|168/377| RP:PDB:NREP 1 RP:PDB:REP 203->320|2b4kA|3e-08|9.5|105/617| RP:PFM:NREP 1 RP:PFM:REP 186->405|PF03403|2e-23|37.7|199/216|PAF-AH_p_II| HM:PFM:NREP 3 HM:PFM:REP 110->246|PF03403|8.7e-16|30.7|127/381|PAF-AH_p_II| HM:PFM:REP 291->434|PF03403|1.8e-10|27.5|138/381|PAF-AH_p_II| HM:PFM:REP 201->328|PF01738|5e-07|25.7|109/217|DLH| GO:PFM:NREP 2 GO:PFM GO:0003847|"GO:1-alkyl-2-acetylglycerophosphocholine esterase activity"|PF03403|IPR005065| GO:PFM GO:0016042|"GO:lipid catabolic process"|PF03403|IPR005065| RP:SCP:NREP 1 RP:SCP:REP 201->333|1ufoA|3e-07|21.0|119/238|c.69.1.27| HM:SCP:REP 105->415|1jfrA_|1.9e-23|25.5|231/260|c.69.1.16|1/1|alpha/beta-Hydrolases| OP:NHOMO 133 OP:NHOMOORG 100 OP:PATTERN -------------------------------------------------------------------- ----2--------------------1----------3------11---------------22-----221-----------1----------------------------------------------------------------1------------------1------------------1---------1111121--11111111----11----1------------------------------------------------------------------------------------------------------------------1-2----------------------------------------------1------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-------------------------------------------------------------------------------------------------------------- ---------------1-42-1111111------2-1----------111122332111---------------------------------------------1---14-21-------1--1-2----141-11--1-1-1-12--11-11--12-1---1-1-------1-------111-1-1---2--------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 325 STR:RPRED 71.3 SQ:SECSTR #################################################################################################################cccccEEEEEEEccGGGTTcccccccccccEEEccccEEEccccccEEcccccccTTTcccccccEEEEEEEEETTTTEEEEEcGGGccHHHTcccTTcccHHHHccGGGHHHHHHTcEEEEEEcTTcTTccccccTTcccccTTccccccHHHHHHHHHHHHHHHcTTHHHHHHHHHcGGGEEEEEEEEEEEHHHHHHHHHHHcccHTcTTcEEEEEEEEEcHHHHTTccccccccHHHHHHHTGGGccTTcEEEEEccTTccccccccHHHHTGGGGTcTTccEEEEEEEEcGGGcGGGGGGcHHHHHHHHHHHHTccccccE################## DISOP:02AL 1-4, 454-456| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccccccEEEEEEEEcccccccccEEEccccHHHHHHHHHHHHHHHHHcccccccEEccccccccccccEEEEEEccccccHHHHHHHHHHHHHccEEEEEEEcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHcccccccEEEEEEcHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEccccccccccccHHHHHHHHHHcccccEEEEEccccccccccccHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccc //