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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55618.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  817/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
c.37.1f.37.1
:622 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   207->288 3gg8D PDBj 6e-04 32.9 %
:BLT:PDB   420->575 1q12A PDBj 3e-15 35.3 %
:RPS:PDB   412->594 2dwoA PDBj 4e-25 10.2 %
:RPS:SCOP  118->393 2hydA2  f.37.1.1 * 1e-08 14.8 %
:RPS:SCOP  420->598 1sgwA  c.37.1.12 * 2e-21 18.7 %
:HMM:SCOP  65->409 2hydA2 f.37.1.1 * 2.3e-12 15.3 %
:HMM:SCOP  414->618 1pf4A1 c.37.1.12 * 8.2e-32 30.7 %
:RPS:PFM   49->346 PF06472 * ABC_membrane_2 1e-44 37.0 %
:RPS:PFM   390->460 PF00437 * GSPII_E 7e-04 46.2 %
:RPS:PFM   443->609 PF05729 * NACHT 8e-06 37.7 %
:HMM:PFM   45->346 PF06472 * ABC_membrane_2 7e-78 31.0 277/282  
:HMM:PFM   454->565 PF00005 * ABC_tran 3.1e-12 39.0 105/118  
:HMM:PFM   443->464 PF05729 * NACHT 5.6e-06 54.5 22/166  
:BLT:SWISS 1->618 Y1819_MYCTU e-167 48.9 %
:PROS 537->551|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55618.1 GT:GENE BAD55618.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 843928..845796 GB:FROM 843928 GB:TO 845796 GB:DIRECTION + GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD55618.1 LENGTH 622 SQ:AASEQ MGSSGLETSRDWGNEFVESLKWLGIAFTATAVGFTIVVALLLTLTRWGRQFWSVSGGYFRGPGAWRTLLFVGALLFMTLVVVRLNVLLSYWGNDMFSSLQAGGSAFAAGDSAALDQAEDAFWKSMIVFTVLIVVWIVNQLVNLYASMAFDIRWRVWLTEHVTTDWLRDRAFYRSRFIDNTIDNPDQRVQQDITTFVNQSRVLSLGAVEAVVSIVSFTKILWDLSGPMTLLGVTIPRDAVFLVLIYVLGTTFIAFWIGRPLIRINFLLERMTANFRYALVRVRDSAESVAFYRGEGTERRGLLARFAEVIRVQWKYVFRYLKFQGWNFTVTQAAVIFPYLIQAPRFFDGAVSLGGVNQTVTAFGNIHDSLSFFRNAYDEFAAYRAALIRIDGLLVAGDDSRELPEIDAADLAEGVRLDKVDVRKPDGHVLIDDLSLALSPGEALVVKGPSGSGKTTLLRALAQMWPYADGRIERPAGDDTLFLSQIPYLPLGDLRVAAEYPGKPEDISDDRLRAVLEKVHLGHLVDRLDEEADWAKILSPGEQQRLAFGRILLLKPKVVFLDEATSAVDEGLEYSLYKLVRTELPETIVVSVAHRSTVDQHHTRKLELQGDGPWTLEPVAVTA GT:EXON 1|1-622:0| BL:SWS:NREP 1 BL:SWS:REP 1->618|Y1819_MYCTU|e-167|48.9|618/639| PROS 537->551|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 5 TM:REGION 21->43| TM:REGION 66->88| TM:REGION 124->146| TM:REGION 199->221| TM:REGION 224->246| SEG 100->117|qaggsafaagdsaaldqa| BL:PDB:NREP 2 BL:PDB:REP 207->288|3gg8D|6e-04|32.9|79/483| BL:PDB:REP 420->575|1q12A|3e-15|35.3|150/367| RP:PDB:NREP 1 RP:PDB:REP 412->594|2dwoA|4e-25|10.2|176/449| RP:PFM:NREP 3 RP:PFM:REP 49->346|PF06472|1e-44|37.0|273/278|ABC_membrane_2| RP:PFM:REP 390->460|PF00437|7e-04|46.2|65/273|GSPII_E| RP:PFM:REP 443->609|PF05729|8e-06|37.7|138/159|NACHT| HM:PFM:NREP 3 HM:PFM:REP 45->346|PF06472|7e-78|31.0|277/282|ABC_membrane_2| HM:PFM:REP 454->565|PF00005|3.1e-12|39.0|105/118|ABC_tran| HM:PFM:REP 443->464|PF05729|5.6e-06|54.5|22/166|NACHT| GO:PFM:NREP 5 GO:PFM GO:0006810|"GO:transport"|PF06472|IPR010509| GO:PFM GO:0016020|"GO:membrane"|PF06472|IPR010509| GO:PFM GO:0005524|"GO:ATP binding"|PF00437|IPR001482| GO:PFM GO:0005622|"GO:intracellular"|PF00437|IPR001482| GO:PFM GO:0006810|"GO:transport"|PF00437|IPR001482| RP:SCP:NREP 2 RP:SCP:REP 118->393|2hydA2|1e-08|14.8|256/323|f.37.1.1| RP:SCP:REP 420->598|1sgwA|2e-21|18.7|171/200|c.37.1.12| HM:SCP:REP 65->409|2hydA2|2.3e-12|15.3|313/0|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 414->618|1pf4A1|8.2e-32|30.7|199/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 7428 OP:NHOMOORG 1062 OP:PATTERN 22--3111233223316-2223115338155--15--1------113221311223212--3321--1 53A6E36A77933487777-7733AE77777589B9AHHI267896758631987218--8B41C49BDH4355573472E72221--111---248--1-34-1314341-11-1----11112875474576366AA531-194678655A7833433322576589852437212316311-13365-332667675465656555D58867675434AC85556365EE44446443664446652363A966677272D662299664146423555733596635443465545111111111111158966698916547388898984766344366587253D463189534431233415-321-354432422254JJJ52A59687HHEGHHHEAEM-66D62B59EV3-dOOOSUJVYdSMDG2338EJBAAFC9D5555555541132728111-------11---1---------1--114--1189978B9ABAEA999888GFAAAA8BD7J94A723AC6B28647DDADD28325-454233243216334475A54574343336133331-1372353243532551444433---------531-22257C491623276667545777748545479--531321-----95GF598BAA9BA898A-AABAA999A8A8AAAAAA9BCBJL6767678676788778788B68599892-E88888888A8811222211211424187J6568462474444364566544215B877767AFF9AC9A4GEF4321242233687H88788DDGGG23423221112212--41441122--------8-5---12-1-2-1------22--1---3192144454-31 1-33DJ5-5353CDE68567CEBECGB764645EA97887579544577EB6DD56A5C765A6337525445964423554446533-EK38998A975828GEC-88QUCLDDFD6587AF8JE7K8a*K-QGb5797J6AOC68853B74R7GBAH9KW8GC84a9EUYQRF4564*66456KMJT7JQ4AJ9ID5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-3, 395-411, 621-622| PSIPRED ccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEccccEEEEcccEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEccccEEEEEEcccccccccHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHccEEEEEEcccEEEEEEEEEcc //