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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55626.1
DDBJ      :             putative two-component system response regulator
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  749/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:219 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->188 1a04A PDBj 2e-28 38.9 %
:BLT:PDB   160->218 2jpcA PDBj 2e-10 45.8 %
:RPS:PDB   8->217 3c3wA PDBj 5e-31 31.7 %
:RPS:SCOP  4->200 1s8nA  c.23.1.1 * 4e-23 26.8 %
:RPS:SCOP  171->218 1fseF  a.4.6.2 * 7e-12 25.0 %
:HMM:SCOP  1->132 1k66A_ c.23.1.1 * 2e-31 34.8 %
:HMM:SCOP  135->221 1p4wA_ a.4.6.2 * 1.3e-20 39.1 %
:RPS:PFM   9->121 PF00072 * Response_reg 5e-12 36.0 %
:RPS:PFM   157->211 PF00196 * GerE 3e-12 60.0 %
:HMM:PFM   9->119 PF00072 * Response_reg 9.4e-29 34.5 110/112  
:HMM:PFM   155->211 PF00196 * GerE 1.1e-19 49.1 57/58  
:BLT:SWISS 8->218 NREC_STACT 7e-45 41.7 %
:PROS 171->198|PS00622|HTH_LUXR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55626.1 GT:GENE BAD55626.1 GT:PRODUCT putative two-component system response regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(850242..850901) GB:FROM 850242 GB:TO 850901 GB:DIRECTION - GB:PRODUCT putative two-component system response regulator GB:PROTEIN_ID BAD55626.1 LENGTH 219 SQ:AASEQ MTAAAPARILLADDHALVRAGLRLIIDAEPDLTVVAEAANGYEAVQRAADTPLDLVILDIAMPRMTGIQAAREIHRSHPDLRLLMLSMYDNEQYFFESLKAGASGYVLKSVADRDLLEACRATLRGEPFLYPGAVTSLIREWLQRTRAGTPPPDNILTAREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQKLGLRDRLALTRYAIRVGLIEP GT:EXON 1|1-219:0| BL:SWS:NREP 1 BL:SWS:REP 8->218|NREC_STACT|7e-45|41.7|211/217| PROS 171->198|PS00622|HTH_LUXR_1|PDOC00542| BL:PDB:NREP 2 BL:PDB:REP 6->188|1a04A|2e-28|38.9|175/205| BL:PDB:REP 160->218|2jpcA|2e-10|45.8|59/61| RP:PDB:NREP 1 RP:PDB:REP 8->217|3c3wA|5e-31|31.7|208/211| RP:PFM:NREP 2 RP:PFM:REP 9->121|PF00072|5e-12|36.0|111/111|Response_reg| RP:PFM:REP 157->211|PF00196|3e-12|60.0|55/57|GerE| HM:PFM:NREP 2 HM:PFM:REP 9->119|PF00072|9.4e-29|34.5|110/112|Response_reg| HM:PFM:REP 155->211|PF00196|1.1e-19|49.1|57/58|GerE| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 2 RP:SCP:REP 4->200|1s8nA|4e-23|26.8|190/190|c.23.1.1| RP:SCP:REP 171->218|1fseF|7e-12|25.0|48/50|a.4.6.2| HM:SCP:REP 1->132|1k66A_|2e-31|34.8|132/149|c.23.1.1|1/1|CheY-like| HM:SCP:REP 135->221|1p4wA_|1.3e-20|39.1|87/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 5088 OP:NHOMOORG 781 OP:PATTERN -----------------------21--2-112--12--1111111-1411214-2-2122-------- EHJ4m85644442475533-39115E333334ECBCFLKL9E8ZHRB67DC8899857--9AK7cEQZmbC6333C55-3329-11--2221--11---7-8243L4M44-------------------1--1-1-EHILK879N9C5996665422221322653DGCG1-21----2-11-776321227AC777778AA9B77B99GFGG8C9CB79AA965554555Qt455565545555555555442-113311--2331233331-1-111233454554444434444444443444444444454422233426E48I2222332223E2443342I372-I4543D9667457355146112A314233-----17NBE3257877822222222223-9888ACC9396-7445846675995413452443443442222222212112D55------------------------------1242-65434957CC8A988599GOCCCD5DAEFDILK12DE9DD877CCCFD46878868931111111-14C9A47F723B64C6887-F8H96AD788968B676--11----------------221-2--B6266685742689AB587AA88787A878--12734------A5455867996865688-9888767767968667666666667668788888888788888877766764-877888777888--4444444111115B4311111211111-112333333322256FHHFCHAHBCCEA8AA9---------235578AAAA5A667GGBBCBA77822221142662222--------41--------------------------11323212223R1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------2-----------3--3-----5---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 218 STR:RPRED 99.5 SQ:SECSTR ccccHHHEEEEEcccHHHHHHHHHHHHTcTTEEEEEEEccHHHHHHHHHHHcccEEEEccEETTEEHHHHHHHHHHHcTTcEEEEGGGcccHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHccTTTTTEccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccccHHHHHHHHHTTTc# DISOP:02AL 1-4, 139-156| PSIPRED ccccccEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccc //